Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUEC_RS01860 Genome accession   NZ_OZ197083
Coordinates   352409..352978 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01949-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 347409..357978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUEC_RS01820 - 347883..348491 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUEC_RS01825 rplL 348666..349034 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUEC_RS01830 rplJ 349077..349577 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUEC_RS01835 rplA 349849..350541 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUEC_RS01840 rplK 350749..351171 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUEC_RS01845 nusG 351352..351900 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUEC_RS01850 secE 351913..352095 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUEC_RS01855 rpmG 352151..352294 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUEC_RS01860 sigH 352409..352978 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUEC_RS01865 - 353059..353583 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUEC_RS01870 rlmB 353583..354329 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUEC_RS01875 - 354337..354741 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUEC_RS01880 cysS 354734..356134 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUEC_RS01885 cysE 356118..356765 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1168917 ACNUEC_RS01860 WP_000872866.1 352409..352978(-) (sigH) [Staphylococcus aureus isolate 23S01949-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1168917 ACNUEC_RS01860 WP_000872866.1 352409..352978(-) (sigH) [Staphylococcus aureus isolate 23S01949-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment