Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUD3_RS09085 Genome accession   NZ_OZ197082
Coordinates   1827923..1828492 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00051-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1822923..1833492
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD3_RS09045 - 1823397..1824005 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACNUD3_RS09050 rplL 1824180..1824548 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUD3_RS09055 rplJ 1824591..1825091 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUD3_RS09060 rplA 1825363..1826055 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUD3_RS09065 rplK 1826263..1826685 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUD3_RS09070 nusG 1826866..1827414 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUD3_RS09075 secE 1827427..1827609 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUD3_RS09080 rpmG 1827665..1827808 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUD3_RS09085 sigH 1827923..1828492 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUD3_RS09090 - 1828573..1829097 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUD3_RS09095 rlmB 1829097..1829843 (-) 747 WP_416764160.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUD3_RS09100 - 1829851..1830255 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUD3_RS09105 cysS 1830248..1831648 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUD3_RS09110 cysE 1831632..1832279 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1168904 ACNUD3_RS09085 WP_000872866.1 1827923..1828492(-) (sigH) [Staphylococcus aureus isolate 23S00051-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1168904 ACNUD3_RS09085 WP_000872866.1 1827923..1828492(-) (sigH) [Staphylococcus aureus isolate 23S00051-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment