Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   ACNUD3_RS04175 Genome accession   NZ_OZ197082
Coordinates   801264..802136 (+) Length   290 a.a.
NCBI ID   WP_000620182.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00051-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 796264..807136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD3_RS04145 - 796410..797177 (+) 768 WP_000176395.1 ribonuclease HII -
  ACNUD3_RS04150 sucC 797286..798452 (+) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  ACNUD3_RS04155 sucD 798474..799382 (+) 909 WP_031775869.1 succinate--CoA ligase subunit alpha -
  ACNUD3_RS04160 - 799609..799677 (+) 69 WP_374731670.1 YSIRK-type signal peptide-containing protein -
  ACNUD3_RS04165 - 799667..799819 (+) 153 Protein_778 cell wall hydrolase -
  ACNUD3_RS04170 fmhC 799847..801091 (+) 1245 Protein_779 FemA/FemB family glycyltransferase FmhC -
  ACNUD3_RS04175 dprA 801264..802136 (+) 873 WP_000620182.1 DNA-processing protein DprA Machinery gene
  ACNUD3_RS04180 topA 802310..804385 (+) 2076 WP_001807811.1 type I DNA topoisomerase -
  ACNUD3_RS04185 trmFO 804541..805848 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33534.97 Da        Isoelectric Point: 9.6076

>NTDB_id=1168885 ACNUD3_RS04175 WP_000620182.1 801264..802136(+) (dprA) [Staphylococcus aureus isolate 23S00051-1]
MIRLFLLKLYWAHFSTKQIHQFLMAYPNVIKEGGRKKDSYLCEWVNREENVHLLRKYYAFIKLDHNDIIKELQKLKVSYI
TYMDTEYPVLLKEIYQFPLLLFYKGNIKLINNMHHLAVVGARDSTSYTQQSLEFLLSNDKSKYLTIVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=1168885 ACNUD3_RS04175 WP_000620182.1 801264..802136(+) (dprA) [Staphylococcus aureus isolate 23S00051-1]
TTGATTAGACTATTTTTGCTTAAGTTATACTGGGCACACTTTTCGACTAAACAAATTCATCAATTTTTAATGGCATATCC
TAATGTAATTAAAGAGGGGGGCAGAAAAAAAGATAGTTATTTATGTGAATGGGTGAATAGGGAAGAAAATGTTCATTTAT
TACGTAAATACTATGCTTTTATAAAACTTGATCATAACGATATTATTAAAGAACTGCAGAAATTAAAAGTAAGTTACATT
ACATATATGGATACTGAATACCCAGTGCTATTAAAAGAAATATATCAATTTCCATTACTTCTTTTCTATAAAGGGAACAT
CAAATTAATAAATAATATGCATCATTTGGCTGTAGTAGGTGCAAGAGATTCTACAAGTTATACCCAACAGTCTTTAGAAT
TTTTATTATCAAATGATAAAAGCAAATATTTAACAATTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATAGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATTGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGCAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

98.966

100

0.99
  dprA Staphylococcus aureus N315

98.621

100

0.986

Multiple sequence alignment