Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUD3_RS03935 Genome accession   NZ_OZ197082
Coordinates   748428..749114 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00051-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 743428..754114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD3_RS03900 yqeH 743955..745055 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUD3_RS03905 aroE 745069..745875 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUD3_RS03910 yhbY 745879..746169 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUD3_RS03915 nadD 746172..746741 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUD3_RS03920 yqeK 746731..747315 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUD3_RS03925 rsfS 747316..747669 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUD3_RS03930 - 747672..748388 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUD3_RS03935 comEA 748428..749114 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUD3_RS03940 - 749206..749667 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUD3_RS03945 comEC 749672..751873 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUD3_RS03950 holA 751930..752904 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUD3_RS03955 - 753021..753968 (+) 948 WP_000121214.1 IS30-like element ISSau1 family transposase -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1168882 ACNUD3_RS03935 WP_001825349.1 748428..749114(+) (comEA) [Staphylococcus aureus isolate 23S00051-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1168882 ACNUD3_RS03935 WP_001825349.1 748428..749114(+) (comEA) [Staphylococcus aureus isolate 23S00051-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment