Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUD3_RS01500 Genome accession   NZ_OZ197082
Coordinates   280726..281121 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00051-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 275726..286121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUD3_RS01470 - 276892..277296 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACNUD3_RS01475 - 277726..277818 (+) 93 WP_374731616.1 hypothetical protein -
  ACNUD3_RS01480 - 277950..278183 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACNUD3_RS01485 murA 278294..279559 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUD3_RS01490 fabZ 279593..280033 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUD3_RS01495 - 280092..280532 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACNUD3_RS01500 ssb 280726..281121 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUD3_RS01505 sceD 281510..282205 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUD3_RS01510 tenA 282592..283281 (+) 690 WP_000396068.1 thiaminase II -
  ACNUD3_RS01515 thiD 283274..284104 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUD3_RS01520 thiM 284088..284879 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUD3_RS01525 thiE 284881..285522 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1168871 ACNUD3_RS01500 WP_000932694.1 280726..281121(+) (ssb) [Staphylococcus aureus isolate 23S00051-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1168871 ACNUD3_RS01500 WP_000932694.1 280726..281121(+) (ssb) [Staphylococcus aureus isolate 23S00051-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment