Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUDY_RS12920 Genome accession   NZ_OZ197081
Coordinates   2566970..2567539 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01946-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2561970..2572539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDY_RS12895 cysE 2563183..2563830 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNUDY_RS12900 cysS 2563814..2565214 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUDY_RS12905 - 2565207..2565611 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUDY_RS12910 rlmB 2565619..2566365 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUDY_RS12915 - 2566365..2566889 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUDY_RS12920 sigH 2566970..2567539 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUDY_RS12925 rpmG 2567654..2567797 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUDY_RS12930 secE 2567853..2568035 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUDY_RS12935 nusG 2568048..2568596 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUDY_RS12940 rplK 2568777..2569199 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUDY_RS12945 rplA 2569407..2570099 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUDY_RS12950 rplJ 2570371..2570871 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUDY_RS12955 rplL 2570914..2571282 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUDY_RS12960 - 2571457..2572065 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1168865 ACNUDY_RS12920 WP_000872866.1 2566970..2567539(+) (sigH) [Staphylococcus aureus isolate 23S01946-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1168865 ACNUDY_RS12920 WP_000872866.1 2566970..2567539(+) (sigH) [Staphylococcus aureus isolate 23S01946-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment