Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUDY_RS06660 Genome accession   NZ_OZ197081
Coordinates   1308327..1308722 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01946-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1303327..1313722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDY_RS06635 thiE 1303926..1304567 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUDY_RS06640 thiM 1304569..1305360 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUDY_RS06645 thiD 1305344..1306174 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUDY_RS06650 tenA 1306167..1306856 (-) 690 WP_000396068.1 thiaminase II -
  ACNUDY_RS06655 sceD 1307243..1307938 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUDY_RS06660 ssb 1308327..1308722 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUDY_RS06665 - 1308916..1309356 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUDY_RS06670 fabZ 1309415..1309855 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUDY_RS06675 murA 1309889..1311154 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUDY_RS06680 - 1311265..1311498 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUDY_RS06685 - 1311630..1311722 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUDY_RS06690 - 1312152..1312556 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1168853 ACNUDY_RS06660 WP_000932694.1 1308327..1308722(-) (ssb) [Staphylococcus aureus isolate 23S01946-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1168853 ACNUDY_RS06660 WP_000932694.1 1308327..1308722(-) (ssb) [Staphylococcus aureus isolate 23S01946-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment