Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUDY_RS01130 Genome accession   NZ_OZ197081
Coordinates   235046..235732 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S01946-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230046..240732
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDY_RS01095 yqeH 230573..231673 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACNUDY_RS01100 aroE 231687..232493 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUDY_RS01105 yhbY 232497..232787 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUDY_RS01110 nadD 232790..233359 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUDY_RS01115 yqeK 233349..233933 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUDY_RS01120 rsfS 233934..234287 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACNUDY_RS01125 - 234290..235006 (+) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUDY_RS01130 comEA 235046..235732 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUDY_RS01135 - 235824..236285 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUDY_RS01140 comEC 236290..238491 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUDY_RS01145 holA 238548..239522 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUDY_RS01150 rpsT 239567..239818 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1168833 ACNUDY_RS01130 WP_001825349.1 235046..235732(+) (comEA) [Staphylococcus aureus isolate 23S01946-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1168833 ACNUDY_RS01130 WP_001825349.1 235046..235732(+) (comEA) [Staphylococcus aureus isolate 23S01946-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment