Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACNUDW_RS08885 Genome accession   NZ_OZ197080
Coordinates   1796896..1797291 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00032-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1791896..1802291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDW_RS08860 thiE 1792495..1793136 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACNUDW_RS08865 thiM 1793138..1793929 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACNUDW_RS08870 thiD 1793913..1794743 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACNUDW_RS08875 tenA 1794736..1795425 (-) 690 WP_000396068.1 thiaminase II -
  ACNUDW_RS08880 sceD 1795812..1796507 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACNUDW_RS08885 ssb 1796896..1797291 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACNUDW_RS08890 - 1797485..1797925 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACNUDW_RS08895 fabZ 1797984..1798424 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACNUDW_RS08900 murA 1798458..1799723 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACNUDW_RS08905 - 1799834..1800067 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACNUDW_RS08910 - 1800199..1800291 (-) 93 WP_374731616.1 hypothetical protein -
  ACNUDW_RS08915 - 1800721..1801125 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1168818 ACNUDW_RS08885 WP_000932694.1 1796896..1797291(-) (ssb) [Staphylococcus aureus isolate 23S00032-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1168818 ACNUDW_RS08885 WP_000932694.1 1796896..1797291(-) (ssb) [Staphylococcus aureus isolate 23S00032-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment