Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACNUDW_RS06455 Genome accession   NZ_OZ197080
Coordinates   1328914..1329600 (-) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00032-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1323914..1334600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDW_RS06435 - 1324060..1325007 (-) 948 WP_000121214.1 IS30-like element ISSau1 family transposase -
  ACNUDW_RS06440 holA 1325124..1326098 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACNUDW_RS06445 comEC 1326155..1328356 (-) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACNUDW_RS06450 - 1328361..1328822 (-) 462 WP_000439690.1 ComE operon protein 2 -
  ACNUDW_RS06455 comEA 1328914..1329600 (-) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACNUDW_RS06460 - 1329640..1330356 (-) 717 WP_000084838.1 class I SAM-dependent DNA methyltransferase -
  ACNUDW_RS06465 rsfS 1330359..1330712 (-) 354 WP_001088020.1 ribosome silencing factor -
  ACNUDW_RS06470 yqeK 1330713..1331297 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACNUDW_RS06475 nadD 1331287..1331856 (-) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACNUDW_RS06480 yhbY 1331859..1332149 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACNUDW_RS06485 aroE 1332153..1332959 (-) 807 WP_000666746.1 shikimate dehydrogenase -
  ACNUDW_RS06490 yqeH 1332973..1334073 (-) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1168807 ACNUDW_RS06455 WP_001825349.1 1328914..1329600(-) (comEA) [Staphylococcus aureus isolate 23S00032-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1168807 ACNUDW_RS06455 WP_001825349.1 1328914..1329600(-) (comEA) [Staphylococcus aureus isolate 23S00032-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment