Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACNUDW_RS01310 Genome accession   NZ_OZ197080
Coordinates   249529..250098 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 23S00032-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 244529..255098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNUDW_RS01285 cysE 245742..246389 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACNUDW_RS01290 cysS 246373..247773 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACNUDW_RS01295 - 247766..248170 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACNUDW_RS01300 rlmB 248178..248924 (+) 747 WP_416764160.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACNUDW_RS01305 - 248924..249448 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACNUDW_RS01310 sigH 249529..250098 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACNUDW_RS01315 rpmG 250213..250356 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACNUDW_RS01320 secE 250412..250594 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACNUDW_RS01325 nusG 250607..251155 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACNUDW_RS01330 rplK 251336..251758 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACNUDW_RS01335 rplA 251966..252658 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACNUDW_RS01340 rplJ 252930..253430 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACNUDW_RS01345 rplL 253473..253841 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACNUDW_RS01350 - 254016..254624 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1168785 ACNUDW_RS01310 WP_000872866.1 249529..250098(+) (sigH) [Staphylococcus aureus isolate 23S00032-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1168785 ACNUDW_RS01310 WP_000872866.1 249529..250098(+) (sigH) [Staphylococcus aureus isolate 23S00032-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment