Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACHEXB_RS12570 Genome accession   NZ_OZ194616
Coordinates   2377303..2377755 (-) Length   150 a.a.
NCBI ID   WP_049686128.1    Uniprot ID   A0A097AUQ6
Organism   Thermoanaerobacter kivui strain CO-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2372303..2382755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHEXB_RS12545 rplI 2373293..2373736 (-) 444 WP_049686123.1 50S ribosomal protein L9 -
  ACHEXB_RS12550 - 2373733..2375700 (-) 1968 WP_049686124.1 DHH family phosphoesterase -
  ACHEXB_RS12555 - 2375719..2376627 (-) 909 WP_049686125.1 YybS family protein -
  ACHEXB_RS12560 - 2376632..2376940 (-) 309 WP_049686126.1 MazG-like family protein -
  ACHEXB_RS12565 rpsR 2377021..2377287 (-) 267 WP_049686127.1 30S ribosomal protein S18 -
  ACHEXB_RS12570 ssbA 2377303..2377755 (-) 453 WP_049686128.1 single-stranded DNA-binding protein Machinery gene
  ACHEXB_RS12575 rpsF 2377787..2378074 (-) 288 WP_049686129.1 30S ribosomal protein S6 -
  ACHEXB_RS12580 - 2378141..2378347 (-) 207 WP_049686130.1 DUF951 domain-containing protein -
  ACHEXB_RS12585 - 2378427..2379278 (-) 852 WP_049686131.1 small-conductance mechanosensitive channel MscS -
  ACHEXB_RS12590 yyaC 2379431..2379988 (+) 558 WP_049686132.1 spore protease YyaC -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16935.92 Da        Isoelectric Point: 4.3472

>NTDB_id=1168731 ACHEXB_RS12570 WP_049686128.1 2377303..2377755(-) (ssbA) [Thermoanaerobacter kivui strain CO-1]
MLNKVILIGRLTKDPVMRYSANMVPVTTFTLAVNRNYVSQSGERPTDFIPIVTWRKLAEICANNLKKGRLIAVTGSIQTR
SWDDNSGNRHWVTEVVADDVRFLEPKSGFGSSGNAEENRDFDEGFDSVFEDIPEEFEGFTPIESEDDLPF

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1168731 ACHEXB_RS12570 WP_049686128.1 2377303..2377755(-) (ssbA) [Thermoanaerobacter kivui strain CO-1]
ATGTTAAATAAGGTTATTTTAATAGGCCGGCTTACAAAAGACCCTGTAATGAGGTATAGTGCCAATATGGTTCCTGTTAC
TACTTTTACGTTAGCGGTTAACAGGAATTATGTCAGTCAGAGCGGGGAAAGGCCTACTGATTTTATACCCATCGTCACAT
GGAGAAAGCTTGCAGAGATCTGCGCTAATAACTTAAAAAAGGGTAGACTAATAGCAGTGACGGGAAGCATTCAAACCCGT
TCATGGGATGATAATAGCGGCAATCGGCATTGGGTTACAGAAGTGGTAGCAGACGATGTGAGATTTTTAGAGCCGAAATC
TGGTTTTGGCAGCAGTGGCAATGCTGAAGAAAATAGAGATTTTGATGAAGGCTTTGACAGTGTATTTGAAGATATACCGG
AAGAGTTTGAGGGCTTTACACCTATAGAGAGTGAAGATGATTTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A097AUQ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.286

100

0.54
  ssb Latilactobacillus sakei subsp. sakei 23K

44

83.333

0.367

Multiple sequence alignment