Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   ACFEL1_RS05790 Genome accession   NZ_OZ183486
Coordinates   1198240..1198392 (+) Length   50 a.a.
NCBI ID   WP_410521703.1    Uniprot ID   -
Organism   Candidatus Tisiphia endosymbiont of Oplodontha viridula isolate 5eb2ed8d-1a12-46ec-bfa5-d4467762f9a1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1193240..1203392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFEL1_RS05765 - 1193892..1194644 (-) 753 WP_375330788.1 IS5 family transposase -
  ACFEL1_RS05770 - 1194977..1195711 (-) 735 WP_375330789.1 TylF/MycF/NovP-related O-methyltransferase -
  ACFEL1_RS05775 - 1195729..1196262 (+) 534 WP_342278979.1 sodium:solute symporter family transporter -
  ACFEL1_RS05780 - 1196297..1197280 (+) 984 WP_342278978.1 hypothetical protein -
  ACFEL1_RS05785 - 1197452..1198213 (+) 762 WP_375330790.1 hypothetical protein -
  ACFEL1_RS05790 cqsS 1198240..1198392 (+) 153 WP_410521703.1 ATP-binding protein Regulator
  ACFEL1_RS05795 - 1198457..1198894 (+) 438 WP_342278976.1 hypothetical protein -
  ACFEL1_RS05800 - 1199037..1199381 (+) 345 WP_342278975.1 hypothetical protein -
  ACFEL1_RS05805 - 1199374..1199793 (-) 420 WP_341761837.1 helix-turn-helix domain-containing protein -
  ACFEL1_RS05810 - 1199982..1200467 (+) 486 WP_375330732.1 helix-turn-helix domain-containing protein -
  ACFEL1_RS05815 - 1200488..1200985 (+) 498 WP_375330791.1 IS630 family transposase -
  ACFEL1_RS05820 - 1201246..1201458 (+) 213 WP_342279063.1 hypothetical protein -
  ACFEL1_RS05825 - 1201476..1201706 (+) 231 WP_375330792.1 hypothetical protein -
  ACFEL1_RS05830 - 1201703..1202098 (-) 396 WP_342278972.1 transposase -
  ACFEL1_RS05835 - 1202098..1202676 (-) 579 WP_375330793.1 hypothetical protein -
  ACFEL1_RS05840 - 1202751..1202939 (-) 189 Protein_1114 transposase -
  ACFEL1_RS05845 - 1202979..1203137 (-) 159 WP_375330794.1 TraU family protein -

Sequence

Protein


Download         Length: 50 a.a.        Molecular weight: 5660.45 Da        Isoelectric Point: 6.0614

>NTDB_id=1168100 ACFEL1_RS05790 WP_410521703.1 1198240..1198392(+) (cqsS) [Candidatus Tisiphia endosymbiont of Oplodontha viridula isolate 5eb2ed8d-1a12-46ec-bfa5-d4467762f9a1]
MPFYTRRANGIGLGLSFCKKIMLSFGGDISCISEEGQYTEFQLNFPNYNT

Nucleotide


Download         Length: 153 bp        

>NTDB_id=1168100 ACFEL1_RS05790 WP_410521703.1 1198240..1198392(+) (cqsS) [Candidatus Tisiphia endosymbiont of Oplodontha viridula isolate 5eb2ed8d-1a12-46ec-bfa5-d4467762f9a1]
ATACCATTTTATACTAGACGTGCAAATGGTATAGGTTTAGGGTTATCTTTTTGTAAAAAAATAATGCTTTCTTTTGGTGG
TGATATATCTTGTATATCTGAAGAGGGGCAATATACAGAGTTTCAATTAAATTTCCCTAATTATAATACATAG

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(2-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

57.143

98

0.56
  lqsT Legionella pneumophila subsp. pneumophila str. Philadelphia 1

44.681

94

0.42

Multiple sequence alignment