Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   ACFEL6_RS16390 Genome accession   NZ_OZ183475
Coordinates   2145408..2146013 (+) Length   201 a.a.
NCBI ID   WP_105055481.1    Uniprot ID   -
Organism   Aliivibrio logei isolate 622f83115ee5131b54a8b4d1     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2140408..2151013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFEL6_RS16370 - 2141080..2142735 (-) 1656 WP_375321209.1 SulP family inorganic anion transporter -
  ACFEL6_RS16375 can 2143075..2143728 (+) 654 WP_181044595.1 carbonate dehydratase -
  ACFEL6_RS16380 - 2143813..2144064 (-) 252 WP_375321210.1 DUF1127 domain-containing protein -
  ACFEL6_RS16385 hpt 2144552..2145079 (-) 528 WP_105055480.1 hypoxanthine phosphoribosyltransferase -
  ACFEL6_RS16390 opaR 2145408..2146013 (+) 606 WP_105055481.1 TetR/AcrR family transcriptional regulator Regulator
  ACFEL6_RS16395 lpdA 2146102..2147532 (-) 1431 WP_105055482.1 dihydrolipoyl dehydrogenase -
  ACFEL6_RS16400 aceF 2147803..2149680 (-) 1878 WP_375321211.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23338.51 Da        Isoelectric Point: 5.3242

>NTDB_id=1168047 ACFEL6_RS16390 WP_105055481.1 2145408..2146013(+) (opaR) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
MDTIQKRPRTRLSPEKRKEQLLDIAIEVFSQRGIGRGGHADVAEIAQVSVATVFNYFPTREDLVDDVLNKVEEQFHQFVK
DSIDLDVDVRSNLHTLLMNIIDTVQSGNKWIKVWFEWSTSTREEVWPLFLSTHVNNQKIIRTMFTEGIERNEVCNDHTPE
NLAKMLHGICYTVFIQANRNHAAEELEDTANCFLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1168047 ACFEL6_RS16390 WP_105055481.1 2145408..2146013(+) (opaR) [Aliivibrio logei isolate 622f83115ee5131b54a8b4d1]
ATGGATACGATCCAAAAAAGGCCTAGAACAAGGCTATCTCCAGAAAAGCGCAAAGAACAACTGCTTGATATTGCAATTGA
GGTATTTTCACAACGTGGTATTGGTCGTGGCGGCCATGCTGATGTTGCTGAAATAGCGCAAGTCTCAGTCGCTACTGTAT
TTAATTATTTCCCAACAAGAGAAGATCTTGTTGATGATGTATTAAATAAAGTAGAAGAGCAATTTCATCAATTCGTTAAA
GACTCCATTGATCTTGATGTAGATGTTCGATCAAACCTTCATACATTATTAATGAACATTATTGATACTGTTCAATCTGG
TAATAAGTGGATTAAGGTATGGTTTGAGTGGAGTACTTCGACTCGTGAAGAAGTATGGCCTCTTTTCTTAAGTACACATG
TGAATAATCAAAAAATTATTCGCACTATGTTTACTGAAGGAATTGAACGTAATGAAGTATGTAATGACCATACTCCTGAA
AACCTAGCGAAAATGCTTCATGGCATCTGCTATACTGTATTTATCCAAGCAAACCGTAATCACGCAGCTGAAGAGCTTGA
AGATACGGCTAACTGCTTCTTAAATATGCTGTGTATTTATAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(21-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

61

99.502

0.607
  hapR Vibrio cholerae C6706

60.804

99.005

0.602
  hapR Vibrio cholerae strain A1552

60.804

99.005

0.602

Multiple sequence alignment