Detailed information    

insolico Bioinformatically predicted

Overview


Name   letA   Type   Regulator
Locus tag   ACFCTL_RS14035 Genome accession   NZ_OZ182546
Coordinates   3100863..3101522 (-) Length   219 a.a.
NCBI ID   WP_011216518.1    Uniprot ID   -
Organism   Legionella pneumophila isolate ZIB8567     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 3095863..3106522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS14020 - 3096537..3097196 (+) 660 WP_011947560.1 hypothetical protein -
  ACFCTL_RS14025 lcl 3097364..3098971 (+) 1608 WP_014842692.1 collagen-like adhesin Lcl -
  ACFCTL_RS14030 uvrC 3098995..3100851 (-) 1857 WP_014842693.1 excinuclease ABC subunit UvrC -
  ACFCTL_RS14035 letA 3100863..3101522 (-) 660 WP_011216518.1 two-component system response regulator LetA Regulator
  ACFCTL_RS14040 phhA 3101647..3102465 (-) 819 WP_014842694.1 phenylalanine 4-monooxygenase -
  ACFCTL_RS14045 - 3102905..3104002 (+) 1098 WP_014842695.1 molybdopterin-binding protein -
  ACFCTL_RS14050 cgtA 3103961..3104986 (-) 1026 WP_014842696.1 Obg family GTPase CgtA -
  ACFCTL_RS14055 rpmA 3105201..3105479 (-) 279 WP_010948350.1 50S ribosomal protein L27 -
  ACFCTL_RS14060 rplU 3105492..3105803 (-) 312 WP_010948351.1 50S ribosomal protein L21 -

Sequence


Protein


Download         Length: 219 a.a.        Molecular weight: 24556.49 Da        Isoelectric Point: 5.1572

>NTDB_id=1168003 ACFCTL_RS14035 WP_011216518.1 3100863..3101522(-) (letA) [Legionella pneumophila isolate ZIB8567]
MIKVLIVDDHALVRMGIRRLLEDMSDVDVVADAESGEQALAYVKTHSPDVVLLDMKMPGIDGWEVTRRLKKTNPNIKVIA
VTAICSDPLPTRVLQLGAMGYLTKESGAEEMAAAIRKVAKGEKYLSAEIAQKMAINSLQESQDSPFDLLSEREMQVMLMI
TSGMNVQDIADRLFLSSKTINGYRYRMFEKLGIKNDVELTYLAMKHRIIEHPNDLSQDD

Nucleotide


Download         Length: 660 bp        

>NTDB_id=1168003 ACFCTL_RS14035 WP_011216518.1 3100863..3101522(-) (letA) [Legionella pneumophila isolate ZIB8567]
TTGATTAAAGTATTAATTGTTGATGACCATGCATTGGTTAGAATGGGCATTCGACGATTGCTTGAAGATATGTCGGATGT
TGATGTGGTTGCAGATGCTGAAAGTGGTGAGCAGGCTTTAGCCTATGTGAAAACCCACTCCCCTGATGTCGTATTATTAG
ACATGAAAATGCCTGGGATAGATGGGTGGGAAGTGACACGTCGCTTAAAAAAAACAAACCCAAATATTAAAGTCATAGCC
GTTACAGCTATTTGCTCAGATCCTCTCCCTACTCGAGTATTGCAATTAGGCGCTATGGGATACCTTACTAAAGAGTCCGG
GGCTGAAGAAATGGCTGCCGCAATTCGTAAAGTGGCCAAAGGTGAGAAATATCTTAGTGCCGAGATAGCACAAAAAATGG
CAATTAATAGTCTCCAGGAGTCTCAGGATTCCCCCTTTGATTTATTGTCTGAAAGAGAAATGCAAGTCATGTTGATGATT
ACTAGCGGCATGAATGTACAAGACATTGCGGATAGATTATTTTTAAGTAGTAAAACTATCAATGGCTATCGATATAGGAT
GTTTGAAAAATTGGGGATTAAAAATGATGTGGAGCTTACTTATTTGGCTATGAAGCACCGCATTATTGAGCACCCCAATG
ATTTGTCACAAGATGATTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

99.543

100

0.995

  letA Legionella pneumophila strain ERS1305867

99.543

100

0.995


Multiple sequence alignment