Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACFCTL_RS11635 Genome accession   NZ_OZ182546
Coordinates   2591673..2592377 (+) Length   234 a.a.
NCBI ID   WP_370695942.1    Uniprot ID   -
Organism   Legionella pneumophila isolate ZIB8567     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2586673..2597377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFCTL_RS11610 - 2587904..2588782 (+) 879 WP_014842287.1 lpg2327 family Dot/Icm T4SS effector -
  ACFCTL_RS11615 lem22 2589047..2589430 (+) 384 WP_014842288.1 Dot/Icm T4SS effector Lem22 -
  ACFCTL_RS11620 - 2589624..2589854 (+) 231 WP_011947173.1 exodeoxyribonuclease VII small subunit -
  ACFCTL_RS11625 - 2589835..2590731 (+) 897 WP_027220505.1 polyprenyl synthetase family protein -
  ACFCTL_RS11630 bioC 2590775..2591629 (-) 855 WP_014842290.1 malonyl-ACP O-methyltransferase BioC -
  ACFCTL_RS11635 comFC 2591673..2592377 (+) 705 WP_370695942.1 ComF family protein Machinery gene
  ACFCTL_RS11640 - 2592406..2593479 (-) 1074 WP_011947177.1 RIP metalloprotease -
  ACFCTL_RS11645 - 2593536..2593814 (-) 279 WP_010948040.1 hypothetical protein -
  ACFCTL_RS11650 - 2593853..2594008 (+) 156 WP_172407379.1 hypothetical protein -
  ACFCTL_RS11655 hemA 2594132..2595406 (+) 1275 WP_027220506.1 glutamyl-tRNA reductase -
  ACFCTL_RS11660 prfA 2595390..2596478 (+) 1089 WP_010948042.1 peptide chain release factor 1 -
  ACFCTL_RS11665 prmC 2596471..2597334 (+) 864 WP_014842294.1 peptide chain release factor N(5)-glutamine methyltransferase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26783.35 Da        Isoelectric Point: 9.1564

>NTDB_id=1167999 ACFCTL_RS11635 WP_370695942.1 2591673..2592377(+) (comFC) [Legionella pneumophila isolate ZIB8567]
MLQKFLSITQNLRLPSICTLCNQFHKSQLAVCSNCMEFMKQLGSCCQYCAYPLSDDTYLVCGQCVRKRPSFDSAYIAYRF
EEPLRSLIHQFKYHNGLYLASFLKQLLLDALPKSALKPDCLIPVPMHPKRLKRRGFNQAAVLTRLLARQLNIPYDLYYCQ
KIINTASQANLDGEQRRKNLRHAFYVSPVTYEHVMIVDDLLTTGSTANEMAHTLKNAGVKRVDICCCARTVTKN

Nucleotide


Download         Length: 705 bp        

>NTDB_id=1167999 ACFCTL_RS11635 WP_370695942.1 2591673..2592377(+) (comFC) [Legionella pneumophila isolate ZIB8567]
GTGCTCCAAAAATTCTTAAGTATAACACAGAACTTACGTTTACCTTCAATATGCACTCTTTGCAACCAGTTCCACAAAAG
CCAACTTGCAGTTTGCTCTAATTGCATGGAGTTTATGAAACAGCTTGGATCTTGCTGTCAGTACTGTGCCTACCCCCTTT
CTGATGATACGTATCTGGTTTGTGGTCAATGCGTTAGAAAAAGGCCCTCCTTTGATAGTGCTTATATAGCGTATCGTTTT
GAAGAACCTCTGCGTAGTTTAATACATCAGTTTAAATACCATAATGGCCTTTATCTGGCCTCGTTTCTAAAGCAATTACT
TCTTGATGCCTTACCCAAAAGCGCATTGAAACCAGATTGTCTAATTCCCGTTCCCATGCATCCCAAACGATTAAAACGAA
GAGGATTTAACCAGGCTGCTGTATTAACCAGATTATTAGCTCGTCAATTAAACATCCCTTATGATTTATATTATTGCCAA
AAAATAATCAATACCGCTTCACAAGCCAACCTTGATGGAGAGCAACGAAGGAAAAATTTACGTCATGCTTTTTATGTATC
ACCTGTAACTTATGAACACGTCATGATTGTTGATGACTTATTAACCACAGGCAGCACAGCCAATGAAATGGCACATACAT
TAAAAAATGCCGGAGTTAAGAGAGTAGATATATGTTGTTGTGCGCGGACTGTAACTAAAAATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Legionella pneumophila str. Paris

98.291

100

0.983
  comFC Legionella pneumophila strain ERS1305867

97.959

83.761

0.821

Multiple sequence alignment