Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AW02_RS17065 Genome accession   NZ_CP007165
Coordinates   3531377..3532762 (-) Length   461 a.a.
NCBI ID   WP_024085865.1    Uniprot ID   -
Organism   Bacillus velezensis NJN-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3526377..3537762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW02_RS17030 (AW02_033680) flgL 3526552..3527469 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  AW02_RS17035 (AW02_033690) flgK 3527481..3528998 (-) 1518 WP_024085862.1 flagellar hook-associated protein FlgK -
  AW02_RS17040 (AW02_033700) - 3529014..3529496 (-) 483 WP_024085863.1 flagellar protein FlgN -
  AW02_RS17045 (AW02_033710) flgM 3529511..3529777 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AW02_RS17050 (AW02_033720) - 3529847..3530266 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AW02_RS17055 (AW02_033730) comFC 3530340..3531029 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  AW02_RS17060 (AW02_033740) - 3531035..3531319 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AW02_RS17065 (AW02_033750) comFA 3531377..3532762 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  AW02_RS17070 (AW02_033760) - 3532870..3533718 (-) 849 WP_024085866.1 DegV family protein -
  AW02_RS17075 (AW02_033770) degU 3533816..3534505 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AW02_RS17080 (AW02_033780) degS 3534582..3535745 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AW02_RS17085 (AW02_033790) - 3535968..3536615 (+) 648 WP_003151384.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52491.85 Da        Isoelectric Point: 10.1310

>NTDB_id=116737 AW02_RS17065 WP_024085865.1 3531377..3532762(-) (comFA) [Bacillus velezensis NJN-6]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRINRFIEKEHITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWEPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGMTNGMKKAKKHIELMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=116737 AW02_RS17065 WP_024085865.1 3531377..3532762(-) (comFA) [Bacillus velezensis NJN-6]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGCATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATCTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGATTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACTTATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.826

99.783

0.627

Multiple sequence alignment