Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   AB5Y62_RS05100 Genome accession   NZ_OZ078860
Coordinates   1097440..1098828 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio splendidus isolate A06     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1092440..1103828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS05080 rsxB 1092845..1093438 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  AB5Y62_RS05085 rsxA 1093441..1094019 (-) 579 WP_004734039.1 electron transport complex subunit RsxA -
  AB5Y62_RS05095 uvrB 1095107..1097137 (+) 2031 WP_017084035.1 excinuclease ABC subunit UvrB -
  AB5Y62_RS05100 luxO 1097440..1098828 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AB5Y62_RS05105 luxU 1098853..1099197 (+) 345 WP_017063462.1 quorum-sensing phosphorelay protein LuxU -
  AB5Y62_RS05110 - 1099288..1100175 (-) 888 WP_017092489.1 YvcK family protein -
  AB5Y62_RS05115 moaA 1100511..1101500 (+) 990 WP_026012219.1 GTP 3',8-cyclase MoaA -
  AB5Y62_RS05120 moaB 1101857..1102369 (+) 513 WP_368084214.1 molybdenum cofactor biosynthesis protein B -
  AB5Y62_RS05125 moaC 1102382..1102861 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  AB5Y62_RS05130 moaD 1102858..1103103 (+) 246 WP_065103215.1 molybdopterin synthase sulfur carrier subunit -
  AB5Y62_RS05135 moaE 1103106..1103579 (+) 474 WP_102472645.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=1166586 AB5Y62_RS05100 WP_004734031.1 1097440..1098828(+) (luxO) [Vibrio splendidus isolate A06]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=1166586 AB5Y62_RS05100 WP_004734031.1 1097440..1098828(+) (luxO) [Vibrio splendidus isolate A06]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTCGAGGATACCGCTTCGGTAGCAGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGTACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGACATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAATAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCACGGCTCTATCGATACCGCCGTAGAAGCCATGCGTCACGGTTCTCAAGA
TTTCCTTATCAAGCCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAACTTAAAA
ACAGCTCGGAACATCCGGGAAACCAAAACTATCAAGGTTTCATTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCAGCATCGAGTAAAGCCAGTATTTTCATCACGGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCAGAAGC
TATTCATGCGGCGAGCAAGCGTGGTGACAAGCCTTTCATCGCGATTAACTGTGCGGCTATCCCTAAAGATCTAATTGAAA
GTGAGCTATTTGGCCACGTTAAAGGCGCCTTTACCGGTGCTGCAACTGATCGTCAAGGTGCCGCTGAACTTGCTGATGGC
GGAACACTATTCCTTGATGAATTGTGCGAAATGGACTTAGAGCTGCAAACCAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTTGGCTCTTCGAAGATGAAGAGTGTCGATGTTCGTTTCGTATGTGCAACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACCTGCCGCCATTGCGCGAG
CGCGGTGAAGATGTCATCGAGATTGCGTACTCGTTACTAGGTTACATGTCGGTTGAGGAAGGTAAGGCGTTTGTGCGTTT
TGCTCAGGAAGTGCTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGGAACG
TGGTGGTATTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCATTGAACCAACCGATTGAAAACAGCTTG
CGCTTGAAAGAGAAGCAGAACGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAGACGGCTATCGA
ACAGGCCATAAAAGCGTGTGACGGCAACATTCCCCGCGCGGCCGGTTTCTTAGACGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment