Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   AB5Y62_RS02735 Genome accession   NZ_OZ078860
Coordinates   554214..554819 (-) Length   201 a.a.
NCBI ID   WP_017079965.1    Uniprot ID   A0A1R3EZ21
Organism   Vibrio splendidus isolate A06     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 549214..559819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS02725 aceF 550454..552352 (+) 1899 WP_368084110.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  AB5Y62_RS02730 lpdA 552595..554022 (+) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  AB5Y62_RS02735 opaR 554214..554819 (-) 606 WP_017079965.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  AB5Y62_RS02740 hpt 555157..555687 (+) 531 WP_004735452.1 hypoxanthine phosphoribosyltransferase -
  AB5Y62_RS02745 can 555766..556425 (-) 660 WP_004735453.1 carbonate dehydratase -
  AB5Y62_RS02750 - 556713..558344 (+) 1632 WP_368084939.1 SulP family inorganic anion transporter -
  AB5Y62_RS02755 - 558666..559583 (+) 918 WP_017087409.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23217.47 Da        Isoelectric Point: 6.4040

>NTDB_id=1166584 AB5Y62_RS02735 WP_017079965.1 554214..554819(-) (opaR) [Vibrio splendidus isolate A06]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAHDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1166584 AB5Y62_RS02735 WP_017079965.1 554214..554819(-) (opaR) [Vibrio splendidus isolate A06]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTAGCAACCGTAT
TTAACTACTTCCCGACCCGTGAAGATCTGGTTGATGAAGTACTAAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCACGA
TAGCCATTGGTTGAACGTATGGTTTGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCTCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCACTGTTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGTTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1R3EZ21

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82

99.502

0.816
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment