Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AB5Y62_RS02630 Genome accession   NZ_OZ078860
Coordinates   531591..532109 (+) Length   172 a.a.
NCBI ID   WP_017079953.1    Uniprot ID   A0A2J6U6Q3
Organism   Vibrio splendidus isolate A06     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 526591..537109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5Y62_RS02620 gshA 529337..530905 (+) 1569 WP_280603028.1 glutamate--cysteine ligase -
  AB5Y62_RS02625 - 530916..531566 (+) 651 WP_029222727.1 hypothetical protein -
  AB5Y62_RS02630 luxS 531591..532109 (+) 519 WP_017079953.1 S-ribosylhomocysteine lyase Regulator
  AB5Y62_RS02635 - 532315..533586 (-) 1272 WP_054541869.1 HlyC/CorC family transporter -
  AB5Y62_RS02640 - 533714..534508 (-) 795 WP_017079954.1 inner membrane protein YpjD -
  AB5Y62_RS02645 ffh 534709..536103 (+) 1395 WP_004735506.1 signal recognition particle protein -
  AB5Y62_RS02650 rpsP 536316..536564 (+) 249 WP_004735508.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18936.61 Da        Isoelectric Point: 4.4820

>NTDB_id=1166579 AB5Y62_RS02630 WP_017079953.1 531591..532109(+) (luxS) [Vibrio splendidus isolate A06]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPSEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKDIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=1166579 AB5Y62_RS02630 WP_017079953.1 531591..532109(+) (luxS) [Vibrio splendidus isolate A06]
ATGCCTTTATTAGATAGTTTCACTGTTGATCACACGCGCATGAACGCACCTGCAGTTCGTGTAGCTAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACCTGCGTTTTACTGCGCCAAACAAAGACATCCTATCTGAGAAAGGTATCC
ATACTCTAGAGCATCTATACGCAGGATTTATGCGTAATCAATTGAATGGTTCAGATGTAGAGATCATCGATATCTCACCG
ATGGGCTGTCGTACTGGTTTCTACATGAGCCTGATTGGTACGCCTTCAGAGCAGCAAGTGGCAGACGGTTGGTTAGCGGC
TATGCAAGATGTGCTGAAAGTTGAGAATCAAAATAAGATCCCTGAGCTGAACGAGTATCAATGTGGTACTGCGGCAATGC
ACTCTTTGGATGAAGCTAAAGATATCGCTAATGCGATCATCGCTGCCGGTATCTCTGTAAACAAAAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAGATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2J6U6Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884

Multiple sequence alignment