Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB3214_RS00295 | Genome accession | NZ_OZ061976 |
| Coordinates | 66375..66962 (+) | Length | 195 a.a. |
| NCBI ID | WP_063516798.1 | Uniprot ID | A0A5P2TXP8 |
| Organism | Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 50708..107676 | 66375..66962 | within | 0 |
Gene organization within MGE regions
Location: 50708..107676
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3214_RS00240 | - | 50708..51946 (-) | 1239 | WP_367367778.1 | S41 family peptidase | - |
| AB3214_RS00245 | - | 52050..52949 (+) | 900 | WP_367367779.1 | helix-turn-helix domain-containing protein | - |
| AB3214_RS00250 | - | 53115..54749 (+) | 1635 | WP_226911033.1 | ABC-F family ATP-binding cassette domain-containing protein | - |
| AB3214_RS00255 | - | 55112..56317 (+) | 1206 | WP_367367780.1 | RNA-guided endonuclease InsQ/TnpB family protein | - |
| AB3214_RS00260 | abc-f | 56771..58354 (-) | 1584 | WP_367367781.1 | ribosomal protection-like ABC-F family protein | - |
| AB3214_RS00265 | recQ | 58721..60517 (+) | 1797 | WP_367367782.1 | DNA helicase RecQ | - |
| AB3214_RS00270 | - | 60480..62099 (-) | 1620 | WP_367367783.1 | ATP-binding cassette domain-containing protein | - |
| AB3214_RS00275 | - | 62197..63177 (+) | 981 | WP_146995269.1 | helix-turn-helix domain-containing protein | - |
| AB3214_RS00280 | - | 63192..64805 (-) | 1614 | WP_146995268.1 | ABC transporter ATP-binding protein | - |
| AB3214_RS00285 | - | 64976..65896 (+) | 921 | WP_367367784.1 | hypothetical protein | - |
| AB3214_RS00290 | rpsF | 66049..66342 (+) | 294 | WP_027828812.1 | 30S ribosomal protein S6 | - |
| AB3214_RS00295 | ssb | 66375..66962 (+) | 588 | WP_063516798.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3214_RS00300 | rpsR | 67006..67245 (+) | 240 | WP_027828810.1 | 30S ribosomal protein S18 | - |
| AB3214_RS00305 | ssb | 67365..67802 (+) | 438 | WP_367367785.1 | single-stranded DNA-binding protein | Machinery gene |
| AB3214_RS00310 | - | 67870..68493 (-) | 624 | WP_367367786.1 | hypothetical protein | - |
| AB3214_RS00315 | - | 68659..68859 (-) | 201 | WP_027828808.1 | cold-shock protein | - |
| AB3214_RS00320 | - | 69185..69961 (-) | 777 | WP_152260000.1 | sulfite exporter TauE/SafE family protein | - |
| AB3214_RS00325 | - | 70073..70669 (+) | 597 | WP_367367787.1 | TMEM175 family protein | - |
| AB3214_RS00330 | - | 70659..71438 (+) | 780 | WP_367367788.1 | hypothetical protein | - |
| AB3214_RS00335 | - | 71423..72448 (-) | 1026 | WP_331243689.1 | NAD-dependent epimerase/dehydratase family protein | - |
| AB3214_RS00340 | - | 72540..72995 (+) | 456 | WP_146995170.1 | MerR family transcriptional regulator | - |
| AB3214_RS00345 | - | 73067..73999 (+) | 933 | WP_367367789.1 | ATP-binding cassette domain-containing protein | - |
| AB3214_RS00350 | - | 73992..74705 (+) | 714 | WP_367367790.1 | ABC transporter permease | - |
| AB3214_RS00355 | - | 74728..75441 (+) | 714 | WP_367367791.1 | ABC transporter permease | - |
| AB3214_RS00360 | - | 75588..76088 (+) | 501 | WP_367367792.1 | EXLDI protein | - |
| AB3214_RS00365 | - | 76136..76669 (+) | 534 | WP_367367793.1 | TMEM175 family protein | - |
| AB3214_RS00370 | - | 76743..76988 (+) | 246 | WP_243892578.1 | DUF3781 domain-containing protein | - |
| AB3214_RS00375 | - | 76989..77693 (-) | 705 | WP_367367794.1 | M23 family metallopeptidase | - |
| AB3214_RS00380 | - | 77730..78383 (-) | 654 | WP_367367795.1 | hypothetical protein | - |
| AB3214_RS00385 | - | 78424..79350 (-) | 927 | WP_367367796.1 | sensor histidine kinase | - |
| AB3214_RS00390 | - | 79353..80030 (-) | 678 | WP_367367797.1 | response regulator transcription factor | - |
| AB3214_RS00395 | - | 80129..81136 (-) | 1008 | WP_367367798.1 | agmatine deiminase family protein | - |
| AB3214_RS00400 | - | 81286..81453 (-) | 168 | WP_155827911.1 | hypothetical protein | - |
| AB3214_RS00405 | - | 81455..81937 (-) | 483 | WP_063516113.1 | NUDIX hydrolase | - |
| AB3214_RS00410 | - | 82014..82403 (-) | 390 | WP_260301534.1 | hypothetical protein | - |
| AB3214_RS00415 | sdaAB | 82609..83274 (+) | 666 | WP_367367799.1 | L-serine ammonia-lyase, iron-sulfur-dependent subunit beta | - |
| AB3214_RS00420 | sdaAA | 83289..84158 (+) | 870 | WP_150392807.1 | L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha | - |
| AB3214_RS00425 | - | 84155..84637 (+) | 483 | WP_367367800.1 | AAA family ATPase | - |
| AB3214_RS00430 | - | 84797..86809 (+) | 2013 | WP_146995182.1 | DHH family phosphoesterase | - |
| AB3214_RS00435 | rplI | 86837..87292 (+) | 456 | WP_027828796.1 | 50S ribosomal protein L9 | - |
| AB3214_RS00440 | dnaB | 87334..88743 (+) | 1410 | WP_027828795.1 | replicative DNA helicase | - |
| AB3214_RS00445 | - | 89125..90429 (+) | 1305 | WP_027828794.1 | adenylosuccinate synthase | - |
| AB3214_RS00450 | - | 90561..91490 (+) | 930 | WP_367367801.1 | ABC transporter ATP-binding protein | - |
| AB3214_RS00455 | - | 91487..92239 (+) | 753 | WP_150392810.1 | ABC transporter permease | - |
| AB3214_RS00460 | - | 92378..92746 (+) | 369 | WP_027828792.1 | PadR family transcriptional regulator | - |
| AB3214_RS00465 | - | 92718..93551 (+) | 834 | WP_367367802.1 | hypothetical protein | - |
| AB3214_RS00470 | - | 93567..94388 (+) | 822 | WP_051225332.1 | hypothetical protein | - |
| AB3214_RS00475 | - | 94385..98299 (-) | 3915 | WP_367367803.1 | lectin-like domain-containing protein | - |
| AB3214_RS00480 | - | 98522..99058 (+) | 537 | WP_063516101.1 | TetR/AcrR family transcriptional regulator | - |
| AB3214_RS00485 | - | 99058..100116 (+) | 1059 | WP_367367804.1 | ABC transporter permease | - |
| AB3214_RS00490 | - | 100131..100814 (+) | 684 | WP_027828787.1 | ABC transporter ATP-binding protein | - |
| AB3214_RS00495 | - | 100949..101740 (+) | 792 | WP_027828786.1 | CPBP family intramembrane glutamic endopeptidase | - |
| AB3214_RS00500 | - | 101791..102414 (+) | 624 | WP_367367805.1 | SAP domain-containing protein | - |
| AB3214_RS00505 | - | 102411..102740 (-) | 330 | WP_146993864.1 | MazG nucleotide pyrophosphohydrolase domain-containing protein | - |
| AB3214_RS00510 | - | 102817..103458 (-) | 642 | WP_367367806.1 | ABC-2 transporter permease | - |
| AB3214_RS00515 | - | 103436..104176 (-) | 741 | WP_367367807.1 | ABC transporter ATP-binding protein | - |
| AB3214_RS00520 | - | 104166..104627 (-) | 462 | WP_150392820.1 | helix-turn-helix domain-containing protein | - |
| AB3214_RS00525 | - | 104823..105035 (+) | 213 | WP_027828781.1 | helix-turn-helix transcriptional regulator | - |
| AB3214_RS00530 | - | 105032..105538 (+) | 507 | WP_146993860.1 | DUF3278 domain-containing protein | - |
| AB3214_RS00535 | - | 105692..106453 (+) | 762 | WP_051225331.1 | CPBP family intramembrane glutamic endopeptidase | - |
| AB3214_RS00540 | - | 106476..107165 (+) | 690 | WP_367367808.1 | lysostaphin resistance A-like protein | - |
| AB3214_RS00545 | - | 107238..107468 (-) | 231 | WP_063516456.1 | CsbD family protein | - |
| AB3214_RS00550 | - | 107503..107676 (-) | 174 | WP_082231185.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 195 a.a. Molecular weight: 21188.89 Da Isoelectric Point: 4.7802
>NTDB_id=1166444 AB3214_RS00295 WP_063516798.1 66375..66962(+) (ssb) [Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388]
MINRVVLVGRLTRDVDLRYTQGGTAVGRFTVAVTRNFKNSQGERDSDFINCTMWRKAAENFAQFTRKGSLVGIDGRIQTH
SYENQQGQRVFVTEVVADDFALLEPKSVTDARPRDTGSDNQGGNPNQGQPYGGNNQSSYNGGQGNNQSQPPFNQNNGNSA
APNANSGAPKKDDSLSDPFADNGQPIDISDDDLPF
MINRVVLVGRLTRDVDLRYTQGGTAVGRFTVAVTRNFKNSQGERDSDFINCTMWRKAAENFAQFTRKGSLVGIDGRIQTH
SYENQQGQRVFVTEVVADDFALLEPKSVTDARPRDTGSDNQGGNPNQGQPYGGNNQSSYNGGQGNNQSQPPFNQNNGNSA
APNANSGAPKKDDSLSDPFADNGQPIDISDDDLPF
Nucleotide
Download Length: 588 bp
>NTDB_id=1166444 AB3214_RS00295 WP_063516798.1 66375..66962(+) (ssb) [Schleiferilactobacillus harbinensis isolate Schleiferilactobacillus harbinensis CIRM-BIA2388]
ATGATCAATCGTGTGGTATTAGTGGGTCGCTTGACCCGGGACGTTGATCTGCGCTACACCCAAGGCGGCACGGCTGTTGG
CCGGTTCACTGTGGCAGTAACGCGGAACTTCAAGAATTCCCAGGGCGAGCGGGACTCCGATTTCATCAATTGTACGATGT
GGCGGAAGGCGGCGGAGAATTTCGCTCAATTCACCCGCAAGGGATCGCTCGTCGGCATTGATGGCCGGATTCAAACTCAC
AGCTATGAGAATCAGCAGGGCCAACGGGTCTTCGTCACCGAAGTGGTGGCCGATGACTTCGCCTTGCTGGAACCCAAGTC
GGTCACCGATGCCCGGCCGCGGGATACTGGCAGTGACAACCAAGGCGGCAACCCGAACCAGGGTCAGCCTTACGGTGGAA
ACAACCAGTCCTCCTACAATGGCGGTCAAGGGAATAATCAGAGCCAGCCTCCTTTCAATCAGAATAATGGTAATTCTGCG
GCCCCCAATGCGAATAGCGGGGCGCCGAAGAAGGATGACTCCTTATCCGATCCATTTGCGGATAACGGTCAGCCCATCGA
CATCTCTGATGACGATTTACCGTTCTAA
ATGATCAATCGTGTGGTATTAGTGGGTCGCTTGACCCGGGACGTTGATCTGCGCTACACCCAAGGCGGCACGGCTGTTGG
CCGGTTCACTGTGGCAGTAACGCGGAACTTCAAGAATTCCCAGGGCGAGCGGGACTCCGATTTCATCAATTGTACGATGT
GGCGGAAGGCGGCGGAGAATTTCGCTCAATTCACCCGCAAGGGATCGCTCGTCGGCATTGATGGCCGGATTCAAACTCAC
AGCTATGAGAATCAGCAGGGCCAACGGGTCTTCGTCACCGAAGTGGTGGCCGATGACTTCGCCTTGCTGGAACCCAAGTC
GGTCACCGATGCCCGGCCGCGGGATACTGGCAGTGACAACCAAGGCGGCAACCCGAACCAGGGTCAGCCTTACGGTGGAA
ACAACCAGTCCTCCTACAATGGCGGTCAAGGGAATAATCAGAGCCAGCCTCCTTTCAATCAGAATAATGGTAATTCTGCG
GCCCCCAATGCGAATAGCGGGGCGCCGAAGAAGGATGACTCCTTATCCGATCCATTTGCGGATAACGGTCAGCCCATCGA
CATCTCTGATGACGATTTACCGTTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
54.872 |
100 |
0.549 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.769 |
100 |
0.508 |