Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB3215_RS08675 Genome accession   NZ_OZ061555
Coordinates   1715513..1717303 (+) Length   596 a.a.
NCBI ID   WP_367367416.1    Uniprot ID   -
Organism   Leuconostoc pseudomesenteroides isolate Leuconostoc pseudomesenteroides CIRM-BIA2446     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1710513..1722303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3215_RS08655 - 1710695..1712137 (+) 1443 WP_367367413.1 ABC transporter substrate-binding protein/permease -
  AB3215_RS08660 - 1712134..1712880 (+) 747 WP_004915796.1 amino acid ABC transporter ATP-binding protein -
  AB3215_RS08665 - 1712935..1714386 (+) 1452 WP_367367414.1 ABC transporter substrate-binding protein/permease -
  AB3215_RS08670 - 1714434..1715435 (+) 1002 WP_367367415.1 competence protein CoiA -
  AB3215_RS08675 pepF 1715513..1717303 (+) 1791 WP_367367416.1 oligoendopeptidase F Regulator
  AB3215_RS08680 - 1717362..1717754 (+) 393 WP_010278613.1 cytidine deaminase -
  AB3215_RS08685 - 1717766..1718206 (+) 441 WP_010278612.1 nucleoside 2-deoxyribosyltransferase -
  AB3215_RS08690 - 1718206..1719135 (+) 930 WP_367367417.1 phosphoglycerate dehydrogenase -
  AB3215_RS08695 - 1719199..1719567 (+) 369 WP_010278609.1 helix-turn-helix domain-containing protein -
  AB3215_RS08700 pheS 1719824..1720873 (+) 1050 WP_010278606.1 phenylalanine--tRNA ligase subunit alpha -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67066.52 Da        Isoelectric Point: 4.4040

>NTDB_id=1166247 AB3215_RS08675 WP_367367416.1 1715513..1717303(+) (pepF) [Leuconostoc pseudomesenteroides isolate Leuconostoc pseudomesenteroides CIRM-BIA2446]
MAQQILRSEVPENLTWDLTTIFESDDAFEAAFKSVQSAAKQLSQYIGHVGESATALLAALEADLAAEREFEKVYVYAHQT
FDQDTTNPKYAAYNAQVQSLYAELSAATSFFQPEVLAIPDETLVKYLATDELTKYQHFFDVLLAQKPHTLPADQEALLAG
ASDIFGASEQTFGALDNSDITFGNVHTEAGEVVPLTNGLYSLLLESQNRDLRQEAFTTLYDSYIGLQNTFASTLSAHVKG
HNFLAKTRHYDSARQSAVSGNNIPESVFQTLTTTVDENLPLLHRFVALRKKILGVDDVHSYDLYVPLVDEIDFDVTYEKA
QQIVLSALAPLGADYVAIVQKAFDERWIDVVENKGKRTGAYSSGAYDTKPFILLNWQNNLNNVYTLVHEMGHSVHSYLTR
HNQEYHYGDYPIFLAEIASTTNEGLLTDYLLETNSDPKFRAYVLNQYLDGFKGTVFRQTQFAEFEQWIHEQSANGTALTA
EVMSDYYGELNQKFYGPDLFPDEAIAYEWSRIPHFYYNFYVYQYATGEAAATTLADRILNGNGAQDYKNYLKSGNSDYAL
NIIQKAGVDMSQAEYLKQAFAVFETRLSELETLLSK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=1166247 AB3215_RS08675 WP_367367416.1 1715513..1717303(+) (pepF) [Leuconostoc pseudomesenteroides isolate Leuconostoc pseudomesenteroides CIRM-BIA2446]
ATGGCACAACAAATATTACGTTCCGAAGTTCCTGAAAATTTGACATGGGATCTCACCACCATTTTCGAGTCAGATGATGC
GTTTGAAGCGGCATTCAAGTCAGTTCAATCTGCAGCAAAACAATTAAGCCAGTATATTGGTCATGTTGGTGAATCTGCCA
CTGCATTGTTGGCTGCATTAGAAGCAGATCTTGCAGCTGAACGAGAATTTGAAAAAGTCTATGTGTATGCACACCAGACT
TTTGATCAAGACACTACTAATCCTAAATATGCGGCTTATAATGCGCAGGTCCAGAGTTTATATGCGGAGTTGAGTGCAGC
AACGTCATTCTTTCAACCGGAAGTCTTAGCTATTCCTGATGAGACATTGGTAAAATATCTTGCCACAGATGAGTTAACCA
AGTATCAGCATTTTTTTGATGTTTTACTTGCTCAAAAGCCTCATACGTTGCCTGCCGATCAAGAAGCGCTCTTAGCAGGT
GCGAGTGACATTTTTGGTGCGTCAGAGCAAACATTTGGTGCACTTGACAATTCTGATATTACATTTGGCAATGTTCATAC
TGAGGCCGGAGAAGTAGTGCCATTAACAAATGGTTTATATTCACTTTTGTTAGAATCTCAAAACCGTGATTTGCGTCAAG
AAGCTTTTACAACTCTATACGATAGTTATATTGGATTACAAAATACGTTTGCCTCAACCTTATCTGCTCATGTAAAGGGG
CACAATTTTTTGGCTAAGACTCGCCACTATGATTCAGCCCGCCAATCTGCTGTTTCAGGAAACAATATTCCTGAAAGTGT
TTTTCAAACACTAACGACAACTGTGGATGAAAACTTACCATTATTACATCGATTTGTTGCGTTGCGTAAGAAAATACTGG
GTGTTGATGATGTACATTCTTATGACTTGTATGTGCCGTTGGTTGATGAAATTGATTTTGACGTAACCTATGAAAAGGCG
CAACAGATTGTCTTATCAGCATTGGCACCGTTGGGGGCAGATTATGTCGCGATTGTTCAAAAAGCGTTTGATGAGCGATG
GATTGATGTTGTCGAGAATAAAGGTAAGCGTACTGGTGCCTATTCAAGTGGTGCCTACGACACTAAACCATTCATTTTGT
TGAATTGGCAAAATAATTTGAATAATGTTTATACCTTGGTTCATGAAATGGGACATTCCGTTCACTCTTATTTAACACGC
CATAACCAAGAGTATCATTATGGCGATTACCCTATTTTTTTGGCAGAAATTGCCTCAACAACTAATGAAGGATTGTTGAC
GGACTATTTGCTGGAAACAAACAGTGATCCTAAGTTTCGTGCTTATGTTTTAAACCAATACTTAGACGGCTTTAAGGGAA
CGGTATTTCGTCAAACTCAGTTTGCGGAATTTGAACAGTGGATCCATGAACAAAGTGCTAATGGGACTGCTTTAACAGCT
GAAGTTATGAGTGATTATTATGGTGAGTTGAATCAAAAGTTCTATGGACCAGATCTTTTTCCTGATGAAGCTATTGCTTA
TGAATGGTCTCGTATTCCTCATTTTTATTATAATTTCTACGTTTATCAGTATGCTACTGGTGAAGCTGCTGCAACCACGC
TGGCAGATCGTATTTTGAATGGCAACGGTGCTCAAGATTATAAAAACTATTTAAAGTCGGGTAATTCAGATTATGCGTTG
AATATTATTCAAAAAGCAGGTGTCGACATGAGTCAAGCTGAATACTTGAAGCAAGCTTTTGCAGTCTTTGAGACACGACT
GTCTGAATTAGAAACACTGCTATCCAAGTGA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-581)

Oligopeptidase F (Peptidase_M3_N)

(114-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.096

99.497

0.508

Multiple sequence alignment