Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB3231_RS00230 Genome accession   NZ_OZ061355
Coordinates   56732..58495 (+) Length   587 a.a.
NCBI ID   WP_105960920.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 51732..63495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3231_RS00210 - 52842..53333 (-) 492 WP_105960916.1 thioredoxin domain-containing protein -
  AB3231_RS00215 - 53785..55119 (-) 1335 WP_105960917.1 MDR family MFS transporter -
  AB3231_RS00220 - 55140..55763 (-) 624 WP_105960918.1 FMN-dependent NADH-azoreductase -
  AB3231_RS00225 - 55968..56417 (+) 450 WP_105960919.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB3231_RS00230 rcrP 56732..58495 (+) 1764 WP_105960920.1 ABC transporter ATP-binding protein Regulator
  AB3231_RS00235 rcrQ 58495..60249 (+) 1755 WP_105960921.1 ABC transporter ATP-binding protein Regulator
  AB3231_RS00240 - 60428..61048 (+) 621 WP_105960922.1 hypothetical protein -
  AB3231_RS00245 - 61236..61817 (+) 582 WP_181186549.1 uracil-DNA glycosylase family protein -
  AB3231_RS00250 - 61970..62188 (+) 219 WP_367376383.1 IS1096 element passenger TnpR family protein -
  AB3231_RS00255 - 62199..62447 (+) 249 WP_105960925.1 IS1096 element passenger TnpR family protein -
  AB3231_RS00260 - 62588..62743 (+) 156 WP_165860956.1 hypothetical protein -
  AB3231_RS00265 - 62712..63080 (+) 369 WP_056953138.1 6-carboxytetrahydropterin synthase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 63609.62 Da        Isoelectric Point: 6.6243

>NTDB_id=1166087 AB3231_RS00230 WP_105960920.1 56732..58495(+) (rcrP) [Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547]
MKKLLGRLNKKEWGLIGLSALLIIIQVGLELQIPSYMTQITTALEMKGTSTSDVLKPGGLMLMLSILSMLTSIAVGFIAA
KVAAGFAARLRASVFGQVMDYSNADIKQFSVPSLLTRSTNDITQIQQFVAMGMQVIIKAPITAIWAISKIANKGWQWTTA
TGVAVLVLVAMLTVILTLVQPRFKIVQGLTDRLNAVIRENLNGIRVVHAYNAEDYQNNKFQTANDNLTKTNLFANRVLAL
MNPGMSLISNGLTLAVYAIGAVLIQSAVMSSKLSLFSNMIVFSSYAMQVIMGFLLLSIIFVILPRVTVSISRINEVLDVA
PSIHYPSESVTPVTSQAVIEFRDVSFRFAATEANVINHLSFTVQPGQTLAIIGSTGSGKTTVLDLLARRYDVTEGEILVD
GVNVKAYPEAELNRKIGYVPQKAVLFSGTIRSNIDFGQTDEHAAALTDDEINEALAIAQASDFVDESTDGLDTPVAQHGD
NFSGGQKQRLAIARAVARKSAILMFDDSFSALDYATDQKLRHALREKASGTTKVIVAQRISTIMDADQIIVLDEGNVAGI
GTHQSLLADNQVYQEIAYSQLSKEELA

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=1166087 AB3231_RS00230 WP_105960920.1 56732..58495(+) (rcrP) [Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547]
ATGAAAAAATTACTGGGACGATTGAATAAGAAAGAATGGGGATTAATTGGGCTCAGCGCACTTTTGATTATCATTCAGGT
TGGGTTAGAACTACAGATTCCTTCTTATATGACGCAAATTACGACGGCGCTTGAAATGAAAGGCACCAGCACTAGTGACG
TACTGAAGCCTGGTGGATTGATGCTCATGTTGTCGATTCTCAGCATGTTGACGTCAATTGCTGTTGGTTTTATTGCGGCG
AAGGTTGCAGCCGGATTTGCAGCACGCTTGCGGGCTAGTGTCTTTGGTCAAGTTATGGATTACTCAAATGCTGATATTAA
ACAATTCTCAGTTCCTAGTCTGTTAACTCGGTCAACCAATGACATTACGCAGATTCAACAATTTGTCGCAATGGGGATGC
AAGTGATTATTAAAGCACCGATTACGGCAATTTGGGCGATTTCCAAGATTGCTAATAAAGGTTGGCAATGGACAACGGCT
ACAGGAGTTGCGGTGCTGGTCCTAGTGGCGATGCTGACCGTCATTTTGACCTTAGTACAGCCACGCTTCAAAATTGTGCA
AGGTCTGACTGATCGCTTGAACGCAGTCATCCGCGAGAATTTGAATGGGATTCGGGTAGTCCACGCTTATAACGCAGAAG
ATTATCAAAATAATAAGTTTCAAACAGCTAACGATAATTTAACGAAGACTAACTTGTTTGCGAACCGGGTCTTGGCACTG
ATGAATCCGGGAATGTCACTAATTTCAAATGGTTTGACGTTGGCCGTGTACGCAATTGGTGCAGTGTTGATTCAGTCGGC
GGTCATGAGCAGTAAATTATCGTTATTCTCAAATATGATCGTCTTTTCATCATATGCAATGCAAGTCATCATGGGATTCC
TGTTACTTTCGATTATCTTTGTGATTTTACCACGAGTCACGGTTTCGATTAGCCGAATTAATGAAGTTTTGGACGTTGCA
CCATCGATTCATTATCCATCGGAGTCGGTAACGCCAGTGACTAGTCAAGCGGTGATTGAATTTCGCGATGTCAGTTTCCG
ATTTGCAGCCACTGAGGCGAATGTCATCAATCATCTTAGCTTTACCGTGCAGCCAGGGCAAACGTTAGCGATTATTGGCT
CAACGGGTAGTGGTAAGACGACGGTCTTGGACTTACTAGCACGTCGGTACGATGTTACTGAAGGTGAAATTCTAGTTGAC
GGTGTCAATGTTAAAGCTTATCCGGAAGCAGAACTCAATCGCAAAATCGGCTATGTGCCACAAAAAGCGGTCCTATTCTC
CGGAACGATTCGCTCAAATATTGATTTTGGACAGACTGACGAGCATGCGGCAGCATTGACAGATGATGAAATCAATGAAG
CGTTAGCAATTGCACAAGCCAGTGATTTTGTTGATGAGAGTACTGATGGTTTGGATACACCGGTTGCACAACATGGTGAT
AACTTCTCTGGTGGTCAAAAGCAGCGGCTTGCAATCGCACGGGCAGTTGCGAGAAAGTCGGCCATTCTGATGTTCGACGA
TTCGTTTTCTGCACTGGATTATGCAACTGACCAAAAATTGCGACACGCCTTACGTGAAAAGGCTAGTGGAACGACAAAAG
TGATTGTGGCCCAACGCATTAGCACAATCATGGATGCAGATCAGATTATCGTGCTTGATGAAGGGAACGTTGCCGGAATT
GGGACGCATCAATCGCTATTAGCAGACAACCAAGTTTATCAAGAAATTGCATACTCACAACTGTCAAAGGAGGAATTAGC
GTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(18-290)

ABC transporter (ABC_tran)

(357-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.351

100

0.564

Multiple sequence alignment