Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB3231_RS00235 Genome accession   NZ_OZ061355
Coordinates   58495..60249 (+) Length   584 a.a.
NCBI ID   WP_105960921.1    Uniprot ID   -
Organism   Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 53495..65249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3231_RS00215 - 53785..55119 (-) 1335 WP_105960917.1 MDR family MFS transporter -
  AB3231_RS00220 - 55140..55763 (-) 624 WP_105960918.1 FMN-dependent NADH-azoreductase -
  AB3231_RS00225 - 55968..56417 (+) 450 WP_105960919.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB3231_RS00230 rcrP 56732..58495 (+) 1764 WP_105960920.1 ABC transporter ATP-binding protein Regulator
  AB3231_RS00235 rcrQ 58495..60249 (+) 1755 WP_105960921.1 ABC transporter ATP-binding protein Regulator
  AB3231_RS00240 - 60428..61048 (+) 621 WP_105960922.1 hypothetical protein -
  AB3231_RS00245 - 61236..61817 (+) 582 WP_181186549.1 uracil-DNA glycosylase family protein -
  AB3231_RS00250 - 61970..62188 (+) 219 WP_367376383.1 IS1096 element passenger TnpR family protein -
  AB3231_RS00255 - 62199..62447 (+) 249 WP_105960925.1 IS1096 element passenger TnpR family protein -
  AB3231_RS00260 - 62588..62743 (+) 156 WP_165860956.1 hypothetical protein -
  AB3231_RS00265 - 62712..63080 (+) 369 WP_056953138.1 6-carboxytetrahydropterin synthase -

Sequence

Protein


Download         Length: 584 a.a.        Molecular weight: 64008.33 Da        Isoelectric Point: 4.7916

>NTDB_id=1166088 AB3231_RS00235 WP_105960921.1 58495..60249(+) (rcrQ) [Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547]
MDKPKTGILAGIRKYGKNYLYAMIVAALMAVVGNIATLLGPNQLSRITNLISKGLRGSIDLQAIGQIVLVLAIIYAVGAI
MSYGQGYIMATVSQAFTRDLRNNVSHKINRLPLTYFDEHDEGDTLSRVTNDLDTFGQSLNQSLGTLISSVVLIVGSIIMM
TYTNWILSLTAVVSAVLGMTITVLLLRKSQGYFTSQQQQLAEVSGYVEEIYSGHEVVKLYNDTDNAVKTFTSLNTKLYNS
VWKSQFLSGIMQPLMTFIGNFGYVAVSVVGALLVLNGTASIGVIVAFMVFVRIFTQPLSQITQAFSSLQSAQAAFRRVLD
FLDEDEASTDEQGVATIERASGKIDFDHVNFEYEPGEPIIKDFSAHVKPGQKVAIVGPTGAGKTTLISLLMKFYQYQGGT
IKLDDQDIANLSAADVRSQFDMVLQDAWLFEDTVMANLKYNQPDIPDETVYKATEVVGLDHFIKTLPDGYDTVLDDSVSL
SVGQKQLMTIARALVRNKPMLILDEATSSVDTRTEEQLQKAMDVLTKGRTSLVIAHRLSTIKNADNILVLNYGEVIESGT
HDELIAADGFYANLYNSQFESLTA

Nucleotide


Download         Length: 1755 bp        

>NTDB_id=1166088 AB3231_RS00235 WP_105960921.1 58495..60249(+) (rcrQ) [Lactiplantibacillus pentosus isolate Lactiplantibacillus pentosus CNRZ1547]
ATGGACAAACCAAAAACAGGGATTCTTGCTGGAATTCGTAAATATGGAAAAAACTATTTATACGCGATGATTGTCGCAGC
GCTAATGGCAGTTGTCGGTAATATTGCGACGTTGTTAGGGCCAAATCAGCTCAGTCGAATCACCAATCTGATTTCAAAGG
GCTTACGAGGCAGTATCGACCTACAAGCGATTGGTCAAATTGTGCTTGTCCTAGCGATTATCTATGCCGTTGGGGCCATC
ATGTCATATGGTCAAGGTTATATCATGGCAACGGTCTCGCAAGCATTCACGCGGGATCTGCGGAACAATGTCTCTCACAA
AATCAACCGATTACCATTGACTTACTTTGATGAACACGATGAAGGGGACACTTTATCGCGAGTCACGAACGATTTGGACA
CTTTTGGACAGTCGCTGAATCAAAGTTTGGGAACGTTGATTTCATCGGTTGTTTTAATCGTCGGGTCGATTATCATGATG
ACCTATACTAACTGGATCCTCAGTTTAACGGCAGTTGTTTCCGCTGTGCTAGGGATGACCATCACAGTCTTGTTATTACG
AAAGTCGCAGGGTTACTTCACGAGCCAACAACAGCAGTTAGCGGAAGTATCCGGGTATGTTGAAGAAATCTATTCCGGAC
ATGAGGTCGTTAAGTTATATAACGATACTGATAACGCGGTCAAAACTTTTACATCATTGAATACGAAACTTTACAATTCC
GTTTGGAAGTCACAATTTCTATCAGGTATTATGCAGCCATTAATGACTTTTATTGGGAATTTCGGTTACGTCGCCGTGAG
TGTTGTTGGTGCGTTACTAGTGCTTAACGGCACGGCTAGCATTGGCGTCATCGTTGCTTTCATGGTCTTTGTCAGAATCT
TTACTCAGCCGCTATCACAGATTACGCAGGCTTTCTCTAGCTTGCAATCTGCTCAGGCTGCCTTCAGACGAGTTCTTGAT
TTCCTTGACGAAGACGAAGCAAGTACAGATGAACAAGGTGTAGCGACGATTGAACGAGCAAGTGGCAAAATCGATTTTGA
TCACGTTAATTTTGAATACGAGCCCGGAGAACCAATTATTAAAGATTTCTCAGCACATGTAAAACCAGGGCAAAAGGTAG
CCATTGTTGGTCCGACGGGCGCTGGTAAAACGACTTTGATTAGTCTGTTGATGAAATTTTATCAGTATCAAGGTGGAACG
ATTAAGCTGGATGATCAAGATATTGCTAACTTGTCAGCAGCGGACGTTCGGTCACAATTTGATATGGTGCTGCAAGATGC
TTGGCTATTTGAAGACACCGTTATGGCTAATTTGAAGTATAATCAGCCGGATATTCCAGATGAGACGGTCTATAAAGCGA
CCGAGGTCGTTGGCTTAGATCACTTCATCAAGACGCTACCGGATGGTTATGATACCGTCTTAGATGATTCAGTCAGTCTA
TCCGTTGGGCAAAAGCAATTAATGACGATTGCGCGTGCTTTGGTTCGCAATAAGCCGATGCTGATTTTGGATGAAGCCAC
AAGTTCGGTCGATACTAGAACGGAAGAACAACTGCAAAAAGCCATGGATGTGTTGACTAAGGGTCGGACTTCATTAGTTA
TTGCTCACCGGTTATCGACGATCAAAAATGCGGACAATATTTTAGTACTAAATTACGGTGAAGTCATCGAGTCCGGGACG
CATGATGAATTGATTGCAGCGGATGGGTTCTATGCTAACTTGTATAACAGTCAATTTGAATCGTTGACGGCCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(361-508)

ABC transporter transmembrane region (ABC_membrane)

(23-298)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.75

99.144

0.543

Multiple sequence alignment