Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB3Y89_RS05900 Genome accession   NZ_OZ061338
Coordinates   1117658..1118524 (-) Length   288 a.a.
NCBI ID   WP_035145813.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate Latilactobacillus sakei J33     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1112658..1123524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y89_RS05885 topA 1113893..1115977 (-) 2085 WP_016265142.1 type I DNA topoisomerase -
  AB3Y89_RS05890 - 1116228..1116662 (-) 435 WP_234057473.1 Rrf2 family transcriptional regulator -
  AB3Y89_RS05895 - 1116691..1117557 (-) 867 WP_035145810.1 NAD(P)H-binding protein -
  AB3Y89_RS05900 dprA 1117658..1118524 (-) 867 WP_035145813.1 DNA-processing protein DprA Machinery gene
  AB3Y89_RS05905 - 1118579..1119340 (-) 762 WP_035145815.1 ribonuclease HII -
  AB3Y89_RS05910 ylqF 1119342..1120190 (-) 849 WP_035145817.1 ribosome biogenesis GTPase YlqF -
  AB3Y89_RS05915 - 1120610..1121509 (-) 900 WP_016265147.1 hypothetical protein -
  AB3Y89_RS05920 - 1121719..1122924 (-) 1206 WP_226474316.1 ATP-binding protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31845.80 Da        Isoelectric Point: 8.5887

>NTDB_id=1166016 AB3Y89_RS05900 WP_035145813.1 1117658..1118524(-) (dprA) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
MLTKNQLLLKVHLAAGFGPISELRLAAWLATSHNWTLSALEIAQIARLPERYWPTFQASFQSTDLQRQCIDHEVRTTYLT
ILDKDYPQRLLETYLPPVLLFYRGDLRLLKQPCLAVVGARQATHYSKQSLEQLLQGLTATTIISGLAQGADAMAHEVALQ
RGLAPIGVIGTGINCSYPPQNEHLQQVVAEKGLLLSEYALGTPARRYQFPARNKIIAGLCHSLIVTEARHKSGSLITANL
ALQANRNVYAIPGRIDQSLSQGCNQLIAAGATPLLDKNILIEELRYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1166016 AB3Y89_RS05900 WP_035145813.1 1117658..1118524(-) (dprA) [Latilactobacillus sakei isolate Latilactobacillus sakei J33]
GTGTTAACTAAAAATCAATTACTCTTAAAAGTACATTTAGCGGCGGGTTTTGGGCCTATTAGTGAATTACGCTTGGCGGC
GTGGCTAGCAACCAGTCATAATTGGACGTTATCGGCGTTAGAAATTGCACAAATTGCGCGCTTGCCGGAACGTTATTGGC
CGACTTTTCAAGCGAGTTTTCAAAGTACGGACCTACAACGCCAATGCATCGACCATGAAGTTCGAACGACTTATTTAACG
ATTTTAGATAAAGACTACCCTCAACGCTTATTGGAAACCTATTTGCCACCTGTTTTGTTATTTTATCGTGGTGATTTAAG
ATTGTTAAAACAGCCATGTCTCGCGGTAGTCGGGGCGCGTCAAGCGACTCATTATTCTAAGCAATCACTAGAACAGTTAT
TACAAGGACTAACTGCCACTACGATTATTAGTGGGTTAGCACAAGGGGCGGATGCGATGGCCCACGAAGTTGCCTTGCAG
CGTGGTTTGGCCCCAATTGGGGTGATTGGCACGGGCATTAATTGCAGTTATCCACCACAAAATGAGCATTTACAACAGGT
AGTTGCTGAAAAAGGCTTGTTACTATCTGAATACGCTCTCGGTACACCAGCCCGGCGTTATCAATTTCCAGCCCGGAATA
AAATCATTGCGGGGTTATGTCATAGCTTAATTGTGACGGAGGCCCGGCACAAGAGTGGTAGCTTGATTACCGCTAACTTG
GCCCTTCAAGCTAATCGCAATGTTTATGCAATTCCGGGGCGCATTGATCAATCACTGTCACAGGGGTGCAACCAATTAAT
CGCCGCGGGTGCGACACCATTGTTAGATAAAAACATATTAATAGAAGAACTACGTTATTTTGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

98.611

100

0.986
  dprA Legionella pneumophila strain ERS1305867

37.5

100

0.375

Multiple sequence alignment