Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AB3225_RS00235 Genome accession   NZ_OZ061332
Coordinates   51711..52577 (-) Length   288 a.a.
NCBI ID   WP_064777129.1    Uniprot ID   A0A1B2A7H5
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus J116     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 46711..57577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3225_RS00220 topA 47964..50048 (-) 2085 WP_004270304.1 type I DNA topoisomerase -
  AB3225_RS00225 - 50283..50726 (-) 444 WP_004270319.1 Rrf2 family transcriptional regulator -
  AB3225_RS00230 - 50759..51616 (-) 858 WP_367370305.1 SDR family oxidoreductase -
  AB3225_RS00235 dprA 51711..52577 (-) 867 WP_064777129.1 DNA-processing protein DprA Machinery gene
  AB3225_RS00240 - 52628..53389 (-) 762 WP_039099416.1 ribonuclease HII -
  AB3225_RS00245 ylqF 53389..54240 (-) 852 WP_162145192.1 ribosome biogenesis GTPase YlqF -
  AB3225_RS00250 lepB 54485..55039 (-) 555 WP_004270310.1 signal peptidase I -
  AB3225_RS00255 - 55039..55263 (-) 225 WP_004270292.1 YozE family protein -
  AB3225_RS00260 - 55273..55905 (-) 633 WP_004270315.1 YpmS family protein -
  AB3225_RS00265 - 55920..56819 (-) 900 WP_076786922.1 SGNH/GDSL hydrolase family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31704.66 Da        Isoelectric Point: 7.7227

>NTDB_id=1165941 AB3225_RS00235 WP_064777129.1 51711..52577(-) (dprA) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
MLTKKQLLLKVHLADGFGPISELRLAAWLVTSHNWALSALEIAQIACLPERYWLTFQTSFDSLALQQKCATHERYVQYLT
ILEADYPQRLLETHCPPTVLFYRGDLSVLKQPCVAVVGARQATEYTKQALQHLLGLPQTTTIISGLAQGADAMAHEVALQ
KGLRPIGVIGTGLNCYYPPQNEHLQQAVAEKGLLISEYGLDVTAKKHHFPARNRIIAGLCHSLVVTEARQKSGSLITANL
ALQANRNVYALPGQVNHSLSAGCNQLILAGATPLLNQQLLLDELHYFD

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1165941 AB3225_RS00235 WP_064777129.1 51711..52577(-) (dprA) [Latilactobacillus curvatus isolate Latilactobacillus curvatus J116]
GTGTTGACTAAAAAGCAATTATTATTGAAAGTACACCTGGCAGATGGGTTTGGCCCCATCAGTGAATTACGCTTAGCCGC
ATGGTTAGTAACGAGTCACAATTGGGCTTTATCGGCATTGGAGATTGCGCAGATTGCGTGTTTACCGGAGCGATATTGGC
TGACCTTTCAGACTAGTTTTGACAGTCTAGCTCTGCAACAGAAGTGTGCCACGCATGAACGTTATGTTCAGTATCTGACG
ATTCTAGAAGCAGATTATCCGCAACGGTTGTTAGAAACCCACTGTCCGCCAACAGTTTTATTTTATCGCGGCGATTTAAG
TGTTTTGAAACAGCCATGTGTTGCGGTGGTTGGTGCGCGGCAAGCCACGGAGTATACTAAGCAAGCCCTGCAGCATTTAT
TGGGATTACCACAAACAACGACGATTATCAGTGGTTTAGCTCAAGGGGCGGATGCGATGGCGCATGAAGTTGCACTCCAA
AAAGGGTTACGACCGATTGGCGTGATTGGAACGGGCTTGAATTGTTATTACCCACCACAAAACGAACACTTGCAACAGGC
GGTCGCTGAAAAAGGGTTATTGATATCAGAATACGGTTTGGACGTAACGGCTAAGAAGCACCACTTCCCAGCCCGAAATC
GGATTATTGCCGGACTTTGTCATAGTTTAGTGGTCACAGAAGCCCGCCAAAAAAGTGGTAGCTTAATCACCGCTAATTTA
GCATTACAAGCCAATCGTAACGTATATGCCTTACCGGGCCAGGTTAATCATTCATTATCGGCAGGCTGTAATCAACTGAT
TTTAGCCGGTGCAACGCCGCTTTTAAATCAACAATTGTTATTGGACGAGTTGCATTATTTTGATTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B2A7H5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Latilactobacillus sakei subsp. sakei 23K

76.389

100

0.764
  dprA Legionella pneumophila strain ERS1305867

36.177

100

0.368

Multiple sequence alignment