Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB3Y92_RS07500 Genome accession   NZ_OZ061327
Coordinates   1456646..1457227 (+) Length   193 a.a.
NCBI ID   WP_058014107.1    Uniprot ID   -
Organism   Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1451646..1462227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y92_RS07470 dapD 1451769..1452479 (+) 711 WP_058014112.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AB3Y92_RS07475 - 1452561..1453691 (+) 1131 WP_061407611.1 N-acetyldiaminopimelate deacetylase -
  AB3Y92_RS07480 - 1453742..1453984 (+) 243 WP_003211408.1 YkuS family protein -
  AB3Y92_RS07485 - 1454014..1454820 (-) 807 WP_058014109.1 mechanosensitive ion channel family protein -
  AB3Y92_RS07490 ahpA 1455092..1455634 (+) 543 WP_003211758.1 biofilm-specific peroxidase AhpA -
  AB3Y92_RS07495 - 1455717..1456175 (+) 459 WP_003211884.1 TlpA disulfide reductase family protein -
  AB3Y92_RS07500 rok 1456646..1457227 (+) 582 WP_058014107.1 transcriptional regulator Rok Regulator
  AB3Y92_RS07505 - 1457279..1458196 (-) 918 WP_058014106.1 hypothetical protein -
  AB3Y92_RS07510 - 1458281..1458862 (+) 582 WP_058014105.1 molybdenum cofactor guanylyltransferase -
  AB3Y92_RS07515 - 1458892..1459908 (+) 1017 WP_058014104.1 thiazole biosynthesis adenylyltransferase ThiF -
  AB3Y92_RS07520 glp 1459918..1461195 (+) 1278 WP_268467034.1 gephyrin-like molybdotransferase Glp -
  AB3Y92_RS07525 mobB 1461177..1461701 (+) 525 WP_058014102.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  AB3Y92_RS07530 - 1461725..1462189 (+) 465 WP_367294305.1 molybdenum cofactor biosynthesis protein MoaE -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21758.71 Da        Isoelectric Point: 9.7309

>NTDB_id=1165904 AB3Y92_RS07500 WP_058014107.1 1456646..1457227(+) (rok) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRAERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASTLGTGQLNGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=1165904 AB3Y92_RS07500 WP_058014107.1 1456646..1457227(+) (rok) [Bacillus pumilus isolate Bacillus pumilus CIRM-BIA2784]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAACAATTAAACGAAGCAGAAGTAAAGGTCATCCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTGCAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATTCTGCATCAACTTTAGGAACAGGACAGCTAAACGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCTCGCCCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

81.053

98.446

0.798

Multiple sequence alignment