Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | AB3221_RS04040 | Genome accession | NZ_OZ061323 |
| Coordinates | 774590..774898 (+) | Length | 102 a.a. |
| NCBI ID | WP_004270901.1 | Uniprot ID | A0AAJ0LFY3 |
| Organism | Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 769590..779898
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB3221_RS04000 | - | 769872..770111 (-) | 240 | WP_004270892.1 | cytochrome b5 domain-containing protein | - |
| AB3221_RS04005 | - | 770306..770641 (+) | 336 | WP_254670607.1 | hypothetical protein | - |
| AB3221_RS04015 | - | 770822..771199 (-) | 378 | WP_111447553.1 | hypothetical protein | - |
| AB3221_RS04020 | - | 771302..771802 (+) | 501 | WP_004270893.1 | VanZ family protein | - |
| AB3221_RS04025 | - | 771892..772623 (+) | 732 | WP_004270897.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| AB3221_RS04030 | comGA | 772727..773602 (+) | 876 | WP_039099523.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AB3221_RS04035 | comGB | 773592..774593 (+) | 1002 | WP_259742539.1 | type II secretion system F family protein | Machinery gene |
| AB3221_RS04040 | comGC | 774590..774898 (+) | 309 | WP_004270901.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AB3221_RS04045 | - | 774963..775322 (+) | 360 | WP_158022155.1 | hypothetical protein | - |
| AB3221_RS04050 | - | 775309..775614 (+) | 306 | WP_056965894.1 | hypothetical protein | - |
| AB3221_RS04055 | - | 775580..775663 (+) | 84 | Protein_775 | type II secretion system protein | - |
| AB3221_RS04060 | - | 775667..776065 (+) | 399 | WP_240327155.1 | ComGF family competence protein | - |
| AB3221_RS04065 | - | 776043..776366 (+) | 324 | WP_039099486.1 | hypothetical protein | - |
| AB3221_RS04070 | - | 776482..777501 (+) | 1020 | WP_311732690.1 | class I SAM-dependent methyltransferase | - |
| AB3221_RS04075 | - | 777523..778716 (+) | 1194 | WP_039099488.1 | acetate/propionate family kinase | - |
| AB3221_RS04080 | - | 778776..779228 (+) | 453 | WP_004270908.1 | laaL | - |
Sequence
Protein
Download Length: 102 a.a. Molecular weight: 11238.13 Da Isoelectric Point: 9.6264
>NTDB_id=1165859 AB3221_RS04040 WP_004270901.1 774590..774898(+) (comGC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK
MKKKRNAFTLIEMVVVLAVIAMLVLLIAPNLMHQKETAEQKTDTALVATIQTQVELAEDDGKTVSSLADLASGEKYLTNN
QVKQAEKRGITIKDNKVVQNTK
Nucleotide
Download Length: 309 bp
>NTDB_id=1165859 AB3221_RS04040 WP_004270901.1 774590..774898(+) (comGC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA
ATGAAGAAGAAAAGAAATGCATTTACATTGATCGAAATGGTCGTTGTGCTAGCTGTGATAGCAATGTTAGTCTTGTTAAT
TGCACCTAATTTAATGCATCAGAAAGAGACAGCTGAGCAAAAAACGGATACGGCTCTAGTGGCAACGATTCAAACACAAG
TTGAATTAGCTGAGGATGACGGTAAAACGGTGTCGAGTCTAGCCGATTTAGCATCAGGTGAAAAATATTTAACCAATAAT
CAGGTTAAACAAGCTGAAAAACGCGGCATAACAATTAAGGATAATAAAGTTGTTCAAAATACAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Latilactobacillus sakei subsp. sakei 23K |
60 |
98.039 |
0.588 |