Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB3221_RS01470 Genome accession   NZ_OZ061323
Coordinates   280012..280719 (-) Length   235 a.a.
NCBI ID   WP_081038321.1    Uniprot ID   A0AAJ0PCE4
Organism   Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 275012..285719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3221_RS01465 rpoC 276298..279939 (+) 3642 WP_004270200.1 DNA-directed RNA polymerase subunit beta' -
  AB3221_RS01470 comC 280012..280719 (-) 708 WP_081038321.1 A24 family peptidase Machinery gene
  AB3221_RS01475 rpsL 280990..281403 (+) 414 WP_004270179.1 30S ribosomal protein S12 -
  AB3221_RS01480 rpsG 281493..281963 (+) 471 WP_004270185.1 30S ribosomal protein S7 -
  AB3221_RS01485 fusA 282055..284142 (+) 2088 WP_004270213.1 elongation factor G -
  AB3221_RS01490 rsgA 284787..285260 (-) 474 WP_263281484.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26544.85 Da        Isoelectric Point: 6.9137

>NTDB_id=1165853 AB3221_RS01470 WP_081038321.1 280012..280719(-) (comC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
MTRLLIYFLTFVIGACCASFLTVCAWRWPLGLSITWPGSRCDFCHHALAWYDLCPIISYLILRGHCRYCDTRIQHHFFTS
EVIGGLLACCLASQYFTPQIGYLLLILYLLSLVDIFHTALYPVPMVLAFMPLFIDYWPTNHWLSALLIGSTLSVINYFSD
GIGTGDIELLAILGLWFGLEVTLSMLLIACLLCLIKYLIDSLHHPVVLALVGRRPIPFVPYISYGVLIVLFIANT

Nucleotide


Download         Length: 708 bp        

>NTDB_id=1165853 AB3221_RS01470 WP_081038321.1 280012..280719(-) (comC) [Latilactobacillus curvatus isolate Latilactobacillus curvatus CIRM-BIA2781]
ATGACACGTTTGTTAATATATTTTTTAACCTTTGTTATTGGCGCGTGTTGCGCCTCTTTTTTAACTGTTTGTGCTTGGCG
TTGGCCACTCGGTTTATCCATCACATGGCCTGGTTCACGGTGTGACTTCTGCCATCACGCCCTCGCTTGGTACGACTTAT
GTCCAATTATCAGTTACCTCATTCTCAGAGGGCACTGCCGCTATTGTGATACTCGAATCCAGCACCATTTTTTTACTAGT
GAGGTTATTGGCGGCTTGTTAGCGTGTTGTTTAGCCAGTCAATATTTCACACCACAGATTGGCTATTTATTGCTTATCCT
TTATTTGTTGAGCCTAGTCGATATTTTCCATACAGCTCTATACCCAGTTCCAATGGTACTGGCTTTTATGCCTTTGTTTA
TTGACTACTGGCCGACAAACCATTGGCTCAGTGCCCTATTGATTGGCAGCACCTTATCTGTCATCAACTACTTTTCAGAT
GGCATCGGTACTGGTGACATTGAATTATTGGCAATTCTTGGGTTGTGGTTTGGATTGGAGGTCACCCTATCCATGTTATT
AATTGCCTGTCTCCTCTGTTTAATCAAATATCTCATTGATAGTCTCCACCATCCAGTTGTCCTCGCCTTAGTCGGACGCC
GCCCAATTCCATTTGTCCCGTATATCAGCTACGGTGTCTTAATCGTTTTGTTTATTGCAAACACATAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(12-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Latilactobacillus sakei subsp. sakei 23K

50.661

96.596

0.489

Multiple sequence alignment