Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB3226_RS07205 Genome accession   NZ_OZ061318
Coordinates   1588613..1590847 (-) Length   744 a.a.
NCBI ID   WP_367372563.1    Uniprot ID   -
Organism   Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1583613..1595847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3226_RS07170 murB 1583994..1585013 (-) 1020 WP_367372558.1 UDP-N-acetylmuramate dehydrogenase -
  AB3226_RS07175 - 1585010..1585474 (-) 465 WP_048395806.1 low molecular weight protein-tyrosine-phosphatase -
  AB3226_RS07180 kdsB 1585474..1586238 (-) 765 WP_367372559.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB3226_RS07185 - 1586235..1586420 (-) 186 WP_003174668.1 Trm112 family protein -
  AB3226_RS07190 lpxK 1586446..1587456 (-) 1011 WP_367372560.1 tetraacyldisaccharide 4'-kinase -
  AB3226_RS07195 - 1587456..1587884 (-) 429 WP_367372561.1 ExbD/TolR family protein -
  AB3226_RS07200 exbB 1587881..1588516 (-) 636 WP_367372562.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB3226_RS07205 comA 1588613..1590847 (-) 2235 WP_367372563.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3226_RS07210 - 1590984..1591499 (+) 516 WP_367372564.1 DUF2062 domain-containing protein -
  AB3226_RS07215 - 1591670..1592449 (-) 780 WP_367372565.1 ABC transporter permease -
  AB3226_RS07220 - 1592446..1593378 (-) 933 WP_367372566.1 ABC transporter ATP-binding protein -
  AB3226_RS07225 - 1593512..1594135 (-) 624 WP_367372567.1 glutathione S-transferase family protein -
  AB3226_RS07230 - 1594179..1594838 (-) 660 WP_367372568.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81577.85 Da        Isoelectric Point: 10.1435

>NTDB_id=1165800 AB3226_RS07205 WP_367372563.1 1588613..1590847(-) (comA) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
MRTGMMALALGLLALRFLPVLPPAGWWLLLPTVGLMLLPFRTFPLAFLLFGLSWAGANAQWALNDRLALNLDGETRWVEG
RVTGLPQQAENVVRFELTDSQSRRTRLPRHLRLAWYGGPPVNGGERWRLAVKLKRPVGLLNPHAFDYDAWLLARHIGATG
TVKDGQRLMEAQWAWRDSIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARYGLWPKRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGAWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLVVLPPAL
LGTLLLPVPYVGEGLLWLAGGLIDLLFKGLALIAGQLPAWVPVAVPLWVWALGMLGAFLLLLPQGVPLRPLGWPMLLLLV
FPPRHTLPEGMAEVWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPSLRKLGVNGLDLMLISHADADHAGGA
RAIANGIPVKQVLSGDHLGLPDELHAEGCESGQQWTWDGVKFQLWQWPSASDSNQKSCVLQIEANGERLLLTGDIDAAAE
RALLDGPLAVPTDWLQAPHHGSRSSSSMALLSALQPKAVLISRGNGNSFGHPHPTIVARYQKRGVVIYDSAEQGAIRLQL
GRFKPPWTMLQERRFWRGPPPSSQ

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=1165800 AB3226_RS07205 WP_367372563.1 1588613..1590847(-) (comA) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGCTTTTTACCGGTATTACCGCCGGCGGGGTGGTG
GCTGTTGCTGCCGACAGTGGGATTGATGTTGCTGCCGTTTCGCACCTTTCCCCTGGCATTTTTGTTGTTCGGTTTGAGTT
GGGCGGGCGCCAATGCACAGTGGGCGCTGAATGATCGCCTGGCGCTGAATCTTGATGGCGAGACTCGCTGGGTCGAAGGT
CGTGTGACCGGGTTACCGCAACAGGCCGAGAATGTGGTGCGTTTTGAACTGACGGACAGTCAGTCGCGTCGCACCAGACT
GCCTCGGCACCTGCGCCTGGCCTGGTATGGCGGGCCGCCCGTCAACGGCGGCGAGCGTTGGCGACTGGCCGTGAAATTGA
AGCGTCCCGTCGGGTTGCTCAATCCGCATGCGTTCGATTACGACGCCTGGTTACTGGCCCGGCACATCGGCGCCACCGGC
ACCGTCAAAGATGGCCAGCGACTGATGGAAGCGCAGTGGGCCTGGCGTGACAGCATCCGTCAGCGTTTGCAGGCCGTGGA
TGCCCAAGGGCGAACGGGGGCGCTGACGGCGTTGGTGCTGGGGGATGGCGCCGGGTTGAGTCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTATTGGTGATTTCCGGGCAGCACATCGGTTTGCTGGCGGGAGTGGTGTATCTGTTG
ATTGCCGGGTTGGCGCGTTACGGCTTATGGCCCAAGCGTTTGCCGTGGCTGCCATGGGCGTGCGGACTGGCGTTCGCGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGCTTCGAAGTGCCGGTGCGGCGGGCCTGCCTGATGATCGGTCTGGTGCTGTTGT
GGCGACTACGGTTTCGTCACCTCGGCGCATGGTGGCCGCTGTTGCTGGCGCTTGACGGTGTTTTGCTGCTGGACCCGTTG
GCGAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCGGTAGCGGTGCTGATTTTCACTTTTGGCGGACGATTGGGGGC
GTGGCGCTGGTGGCAAACCTGGACTCGCGCCCAATGGCTGATCGCGATCGGTCTGTGCCCGCTGCTGTTGGTGCTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATTTGCTGGCGGTGCCCTGGATCAGTCTGGTGGTCCTGCCGCCGGCCTTG
CTCGGGACACTGTTGTTGCCCGTTCCTTATGTGGGCGAAGGATTGCTATGGTTGGCCGGCGGTCTGATCGACCTTCTGTT
CAAGGGGTTGGCGTTGATAGCCGGGCAATTGCCTGCGTGGGTGCCGGTGGCGGTCCCGTTGTGGGTATGGGCGCTCGGCA
TGTTGGGAGCCTTTCTGCTGTTATTGCCGCAAGGCGTGCCGTTGCGCCCGTTGGGTTGGCCGATGTTGCTGTTACTGGTT
TTTCCGCCCCGGCACACATTGCCTGAAGGCATGGCCGAGGTCTGGCAGTTGGATGTCGGTCAGGGTTTGGCAATCCTGGT
GCGTACCCGCCATCACACCTTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACCTGGGTGAGCGGGTGGTGCTGC
CGTCATTGCGCAAACTGGGGGTGAACGGCCTCGATCTGATGCTGATCAGCCATGCCGATGCCGATCACGCCGGCGGTGCG
CGTGCAATTGCCAATGGAATACCGGTGAAGCAAGTACTGAGTGGCGATCACTTGGGCTTGCCAGACGAATTGCACGCCGA
GGGCTGCGAGAGCGGTCAGCAATGGACTTGGGACGGGGTGAAGTTTCAACTCTGGCAGTGGCCGTCTGCCAGCGACAGCA
ATCAGAAATCCTGCGTGTTGCAGATCGAGGCCAACGGCGAGCGATTGCTGCTGACCGGTGACATCGATGCCGCAGCCGAA
CGGGCGCTGCTCGACGGTCCATTGGCGGTGCCGACGGATTGGTTGCAGGCCCCGCACCATGGCAGTCGCAGTTCGTCTTC
GATGGCATTGCTCAGCGCCTTGCAACCTAAAGCGGTGTTGATCTCCCGTGGTAACGGCAATTCTTTCGGTCATCCCCATC
CCACAATCGTGGCGCGGTATCAAAAGCGCGGTGTGGTGATCTATGACAGCGCCGAACAAGGTGCCATTCGTCTGCAACTG
GGACGCTTCAAGCCGCCGTGGACGATGCTTCAAGAACGGCGCTTCTGGCGCGGTCCGCCACCCTCCAGCCAGTAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-681)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.345

96.505

0.621

Multiple sequence alignment