Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB3226_RS07200 Genome accession   NZ_OZ061318
Coordinates   1587881..1588516 (-) Length   211 a.a.
NCBI ID   WP_367372562.1    Uniprot ID   -
Organism   Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1582881..1593516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3226_RS07165 - 1583287..1583757 (-) 471 WP_367372557.1 (2Fe-2S)-binding protein -
  AB3226_RS07170 murB 1583994..1585013 (-) 1020 WP_367372558.1 UDP-N-acetylmuramate dehydrogenase -
  AB3226_RS07175 - 1585010..1585474 (-) 465 WP_048395806.1 low molecular weight protein-tyrosine-phosphatase -
  AB3226_RS07180 kdsB 1585474..1586238 (-) 765 WP_367372559.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB3226_RS07185 - 1586235..1586420 (-) 186 WP_003174668.1 Trm112 family protein -
  AB3226_RS07190 lpxK 1586446..1587456 (-) 1011 WP_367372560.1 tetraacyldisaccharide 4'-kinase -
  AB3226_RS07195 - 1587456..1587884 (-) 429 WP_367372561.1 ExbD/TolR family protein -
  AB3226_RS07200 exbB 1587881..1588516 (-) 636 WP_367372562.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB3226_RS07205 comA 1588613..1590847 (-) 2235 WP_367372563.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB3226_RS07210 - 1590984..1591499 (+) 516 WP_367372564.1 DUF2062 domain-containing protein -
  AB3226_RS07215 - 1591670..1592449 (-) 780 WP_367372565.1 ABC transporter permease -
  AB3226_RS07220 - 1592446..1593378 (-) 933 WP_367372566.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22925.13 Da        Isoelectric Point: 6.8771

>NTDB_id=1165799 AB3226_RS07200 WP_367372562.1 1587881..1588516(-) (exbB) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=1165799 AB3226_RS07200 WP_367372562.1 1587881..1588516(-) (exbB) [Pseudomonas lini isolate Pseudomonas lini CIRM-BIA2854]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGTCTGTGGACCCTGCGTGCCAGCCGCGTGACCCCGGAGCATTTGCTCGGGCAAGTCTGGGTCTGGATCAAGGACA
AACAACTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCTCCGTTGGGCGAGATCCTGGCCGCCGGTCTGGCGAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCAGCGCGGGTGATTCATGAGCTCGAGCGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCCCCATTGTTGGGGCTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GTGCGTTCATGGGCACGGGCATGGGCACCAATGCCGCCGTATTGGCCGGTGGTATTTCCAAAGCGCTGATCACCACCGCC
GCCGGTCTGATGGTCGGTATCCCGGCCGTGTTCTTCCACCGTTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTAGTGCAGGGTGACCGCGACGTGGATCTGGCTGAGGGTAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853

Multiple sequence alignment