Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   AB3Y84_RS11295 Genome accession   NZ_OZ061291
Coordinates   2271092..2271583 (-) Length   163 a.a.
NCBI ID   WP_098384270.1    Uniprot ID   -
Organism   Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2266092..2276583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3Y84_RS11295 comX 2271092..2271583 (-) 492 WP_098384270.1 competence protein ComX Regulator
  AB3Y84_RS11300 ezrA 2271840..2273570 (-) 1731 WP_003132670.1 septation ring formation regulator EzrA -
  AB3Y84_RS11305 tsf 2273775..2274803 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  AB3Y84_RS11310 rpsB 2274925..2275692 (-) 768 WP_010906340.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19805.66 Da        Isoelectric Point: 5.6118

>NTDB_id=1165724 AB3Y84_RS11295 WP_098384270.1 2271092..2271583(-) (comX) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVIFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMQRYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1165724 AB3Y84_RS11295 WP_098384270.1 2271092..2271583(-) (comX) [Lactococcus lactis isolate Lactococcus lactis CIRM-BIA2553]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTGTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGATCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGCAACGGTATCGCCTTCGTGAAAAAATAAAGGCCATCTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.773

100

0.988
  comX Lactococcus lactis subsp. cremoris KW2

75.46

100

0.755

Multiple sequence alignment