Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3234_RS13120 Genome accession   NZ_OZ061257
Coordinates   2856823..2857392 (-) Length   189 a.a.
NCBI ID   WP_125583401.1    Uniprot ID   -
Organism   Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2851823..2862392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3234_RS13105 - 2853467..2855074 (+) 1608 WP_125583399.1 peptide ABC transporter substrate-binding protein -
  AB3234_RS13110 - 2855212..2856399 (+) 1188 WP_125583400.1 amidohydrolase family protein -
  AB3234_RS13115 rpsR 2856555..2856794 (-) 240 WP_048733694.1 30S ribosomal protein S18 -
  AB3234_RS13120 ssb 2856823..2857392 (-) 570 WP_125583401.1 single-stranded DNA-binding protein Machinery gene
  AB3234_RS13125 rpsF 2857426..2857722 (-) 297 WP_125583402.1 30S ribosomal protein S6 -
  AB3234_RS13130 - 2858027..2859316 (-) 1290 WP_125583403.1 FAD-binding oxidoreductase -
  AB3234_RS13135 - 2859294..2860094 (-) 801 WP_125583404.1 FAD:protein FMN transferase -
  AB3234_RS13140 - 2860107..2860580 (-) 474 WP_125583405.1 FMN-binding protein -
  AB3234_RS13145 - 2860796..2861575 (-) 780 WP_125583406.1 helix-turn-helix domain-containing protein -
  AB3234_RS13150 - 2861565..2861852 (-) 288 WP_125583407.1 hypothetical protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20709.34 Da        Isoelectric Point: 4.7590

>NTDB_id=1165680 AB3234_RS13120 WP_125583401.1 2856823..2857392(-) (ssb) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNKTGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVEDFSFLEPRSRNANNEGGNYNGGSANNAPQQNQNQNANPYTSGNSAPTSNPTQPTIPNPVNNN
QGNTGNNNSADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165680 AB3234_RS13120 WP_125583401.1 2856823..2857392(-) (ssb) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
ATGATCAACCGAGTAGTGCTTACTGGCCGACTGACACGGGATGTTGACTTACGTTATACCCAAGGCGGTGCTGCTGTTGC
CACCTTTACGCTGGCTGTTGATCGGCGGTTCACCAACAAAACGGGTGAACGGGAAGCTGATTTCGTAAGTTGCGTCATCT
GGCGCAAGTCCGCGGAAAACTTTGCTAACTTCTTCCACAAGGGTTCCCTTGTTGGAATTGAAGGACGCATCCAGACCCGG
AATTACGAAAATCAACAAGGCCAACGTGTTTACGTGACCGAAGTTGTTGTCGAGGACTTTTCGTTCCTTGAACCGCGTTC
TCGCAACGCCAACAACGAAGGTGGTAACTACAATGGTGGTTCCGCGAATAATGCTCCTCAGCAAAATCAGAATCAAAATG
CCAACCCGTACACGAGTGGGAATTCGGCGCCAACGTCGAATCCAACTCAACCTACGATACCGAATCCGGTGAATAACAAT
CAGGGGAACACTGGGAACAATAACTCAGCCGATCCGTTTGCCAATTCCGGTGATTCAATTGACATTTCCGATGATGATTT
ACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.317

100

0.603
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.614

100

0.566

Multiple sequence alignment