Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3234_RS06895 Genome accession   NZ_OZ061257
Coordinates   1502586..1504301 (-) Length   571 a.a.
NCBI ID   WP_125582873.1    Uniprot ID   -
Organism   Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1497586..1509301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3234_RS06885 - 1497884..1499938 (-) 2055 WP_164511568.1 collagen binding domain-containing protein -
  AB3234_RS06890 - 1500122..1502434 (-) 2313 WP_367377071.1 collagen binding domain-containing protein -
  AB3234_RS06895 recN 1502586..1504301 (-) 1716 WP_125582873.1 DNA repair protein RecN Machinery gene
  AB3234_RS06900 - 1504375..1504830 (-) 456 WP_125582871.1 arginine repressor -
  AB3234_RS06905 - 1504923..1505738 (-) 816 WP_125582869.1 TlyA family RNA methyltransferase -
  AB3234_RS06910 - 1505739..1506641 (-) 903 WP_125582867.1 polyprenyl synthetase family protein -
  AB3234_RS06915 - 1506631..1506879 (-) 249 WP_125582865.1 exodeoxyribonuclease VII small subunit -
  AB3234_RS06920 xseA 1506872..1508224 (-) 1353 WP_125582863.1 exodeoxyribonuclease VII large subunit -
  AB3234_RS06925 - 1508211..1509077 (-) 867 WP_125582861.1 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 571 a.a.        Molecular weight: 63099.26 Da        Isoelectric Point: 4.9766

>NTDB_id=1165667 AB3234_RS06895 WP_125582873.1 1502586..1504301(-) (recN) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
MLQELSIKNFAIIDQLDVAFKNGMTVLTGETGAGKSIIIDAVGLLAGGRGSANFVRTGTDKAVIQGSFVFPTGGTTYQVL
DELGIDHDDGSVILQREIHQNGRNTCRVNGMLVNTNTLKRIGETAVDIHGQNEHQELMQPEKHLGMLDEFAGSPVAKLRQ
RYQAVYQQYTQLQATLENKRANEKEWAQHLDMLKFQVKEIESAQLQPGEEDDLVAERDRLDNFQRINDALQLVQITLTGE
DTAPGANDQISGAMQAMQGIADFDPAFKQIAASLESAYYALSDAVGDVSSQLDLLEWDEGRLDEIERRLDVINQLKRKYG
DSEGQVLKYFDKIAAELKQMQSTDETADDLETQVATQRTTLLKLGEQLSKARKQSAEKLETAIHGELADLYMDKTVFAVH
FTRSKNQPVLSTGLDHVEFYLRTNPGEAMRPLAKIASGGELSRIMLALKTIFSESQGITSIIFDEVDTGVSGRVAQAIAE
KISGIARASQVLCITHLPQVAAMADHHYFIAKEIKGDRTETQLTRLSEQDRVSEIARMSAGTQVTKLALEHASELLGLAD
EVKEKHTKKKK

Nucleotide


Download         Length: 1716 bp        

>NTDB_id=1165667 AB3234_RS06895 WP_125582873.1 1502586..1504301(-) (recN) [Levilactobacillus cerevisiae isolate Levilactobacillus cerevisiae CIRM-BIA2671]
GTGTTACAAGAGCTGTCAATTAAAAATTTTGCTATCATCGACCAGTTAGACGTCGCTTTTAAGAACGGCATGACGGTCTT
AACCGGTGAGACTGGGGCCGGTAAATCAATTATTATTGATGCCGTTGGTCTCTTAGCTGGTGGCCGGGGATCGGCTAATT
TCGTGCGGACCGGAACGGATAAGGCCGTCATTCAAGGAAGCTTTGTCTTTCCCACGGGCGGCACCACGTATCAGGTGTTG
GATGAACTCGGAATTGACCACGATGATGGCAGCGTCATTTTACAACGCGAAATCCACCAAAATGGGCGGAATACCTGTCG
CGTCAACGGGATGTTGGTGAACACCAACACCCTCAAGCGAATTGGGGAAACGGCCGTTGACATTCACGGTCAAAATGAGC
ATCAAGAGTTGATGCAACCGGAAAAACACTTGGGGATGCTGGATGAATTTGCCGGCAGTCCCGTTGCCAAGTTGCGCCAG
CGTTATCAGGCTGTTTATCAGCAGTACACCCAATTACAAGCAACCTTAGAAAATAAGCGGGCCAATGAAAAAGAGTGGGC
CCAACATTTAGACATGTTAAAGTTTCAGGTCAAGGAAATCGAGTCCGCACAACTCCAACCGGGTGAAGAAGACGACTTGG
TGGCTGAACGTGACCGCTTGGACAATTTCCAACGCATTAACGATGCGCTCCAGTTGGTACAAATCACGCTAACGGGTGAG
GACACGGCACCTGGCGCTAATGATCAAATTAGTGGCGCCATGCAGGCCATGCAAGGGATTGCGGACTTTGATCCGGCGTT
TAAACAAATCGCTGCTAGTCTAGAATCCGCGTATTATGCGTTGAGCGATGCCGTGGGCGACGTTTCGTCTCAGTTGGACT
TACTTGAATGGGATGAGGGTCGTTTAGATGAAATTGAACGGCGACTCGACGTAATTAACCAGTTGAAGCGCAAATACGGT
GATTCTGAGGGACAAGTCTTGAAGTATTTTGACAAGATTGCCGCAGAACTCAAGCAGATGCAGTCAACGGATGAAACGGC
CGACGACTTGGAAACCCAAGTGGCTACCCAGCGGACGACGCTACTGAAGCTGGGCGAGCAACTCAGTAAAGCTCGTAAGC
AATCTGCCGAAAAATTGGAAACCGCTATTCACGGCGAGCTGGCGGATCTTTACATGGATAAAACGGTGTTCGCTGTACAT
TTCACCCGGTCGAAGAACCAGCCCGTTCTCAGTACGGGGCTGGATCACGTGGAATTTTATCTCCGCACGAATCCGGGAGA
AGCCATGCGGCCACTTGCGAAGATTGCGTCCGGTGGGGAACTTTCCCGAATCATGCTGGCTTTGAAGACTATTTTCTCTG
AGTCGCAAGGGATTACCTCGATTATTTTTGATGAAGTGGACACCGGGGTCAGTGGTCGGGTGGCGCAAGCAATCGCTGAG
AAGATCAGCGGGATTGCCCGGGCCTCACAAGTGCTGTGTATTACCCATTTGCCCCAAGTGGCCGCGATGGCCGATCACCA
TTATTTCATTGCCAAAGAAATCAAGGGTGATCGGACGGAAACCCAGCTGACCCGTTTGAGTGAGCAGGACCGGGTGAGTG
AAATTGCCCGGATGTCTGCCGGGACGCAGGTCACGAAGCTGGCGTTGGAACACGCGAGTGAATTGTTGGGCTTGGCCGAC
GAGGTTAAAGAAAAACACACGAAAAAGAAAAAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.917

100

0.483

Multiple sequence alignment