Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB3219_RS09075 Genome accession   NZ_OZ061250
Coordinates   1846737..1848425 (-) Length   562 a.a.
NCBI ID   WP_216762653.1    Uniprot ID   -
Organism   Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1841737..1853425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3219_RS09040 rpoZ 1841794..1842003 (-) 210 WP_057783506.1 DNA-directed RNA polymerase subunit omega -
  AB3219_RS09045 gmk 1842005..1842619 (-) 615 WP_057806232.1 guanylate kinase -
  AB3219_RS09050 - 1842803..1843114 (+) 312 WP_216753633.1 hypothetical protein -
  AB3219_RS09055 - 1843133..1843804 (-) 672 WP_216753632.1 ABC transporter permease -
  AB3219_RS09060 - 1843807..1844742 (-) 936 WP_216753631.1 osmoprotectant ABC transporter substrate-binding protein -
  AB3219_RS09065 - 1844756..1845394 (-) 639 WP_057806237.1 ABC transporter permease -
  AB3219_RS09070 - 1845391..1846587 (-) 1197 WP_367369408.1 betaine/proline/choline family ABC transporter ATP-binding protein -
  AB3219_RS09075 recN 1846737..1848425 (-) 1689 WP_216762653.1 DNA repair protein RecN Machinery gene
  AB3219_RS09080 - 1848456..1848911 (-) 456 WP_216753629.1 arginine repressor -
  AB3219_RS09085 - 1848925..1849752 (-) 828 WP_216753628.1 TlyA family RNA methyltransferase -
  AB3219_RS09090 - 1849749..1850654 (-) 906 WP_216762652.1 polyprenyl synthetase family protein -
  AB3219_RS09095 - 1850654..1850899 (-) 246 WP_057806247.1 exodeoxyribonuclease VII small subunit -
  AB3219_RS09100 xseA 1850892..1852244 (-) 1353 WP_216753626.1 exodeoxyribonuclease VII large subunit -
  AB3219_RS09105 folD 1852237..1853100 (-) 864 WP_216753625.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 562 a.a.        Molecular weight: 63173.75 Da        Isoelectric Point: 5.0129

>NTDB_id=1165626 AB3219_RS09075 WP_216762653.1 1846737..1848425(-) (recN) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
MLQELSIRNFAIIEKLNIEFNSGMTVLTGETGAGKSIIIDAVGLLAGGRGSVDFIRKGAKKAVLQGMFSMDKNPDTLALL
NQYGIDHSDPTLILQREIQMSGRNVCRINGSLVNTTILKQIGETLIDIHGQNEHQELMQPDKHLGMLDEFARNEVKPLLK
QYQEEYERYQALKKKFDRKKANEKEWAQRVDMLRFQAKEIEDANLQVGEEEQLNSQKELLENFQKISTALQTAQLALENE
ESAGAIDTTGEAMNALRDIEDIDDKYKNISNIVSSAYYQLQDATNDISGELDNMEWDEGKLDQVEKRLEDIYQLKKKYGD
NIKQILAYDQKVSDELHSMIDSESDEGQMEEKLEKLQESLKKTAITLSQTRKKAAKHLKIAVHEQLQQLYMDKAEFEVHF
SQTDDLKFKPTGIDNVEFYLRTNTGEAMGPLSRIASGGELSRIMLALKTIFAKSQGVTSIIFDEVDTGVSGRVAQAIAEK
IKLIAGYSQVLCITHLPQVAAEADHQLFVSKVIKDGRTETKLNDLDTDGRVQELARMLAGSTVTKLSIQHAKELLKMAHT
TS

Nucleotide


Download         Length: 1689 bp        

>NTDB_id=1165626 AB3219_RS09075 WP_216762653.1 1846737..1848425(-) (recN) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
ATGCTGCAAGAATTATCAATTCGAAATTTTGCAATTATTGAAAAACTAAATATTGAATTTAATTCAGGAATGACCGTGTT
AACTGGTGAAACTGGAGCGGGAAAATCAATTATTATTGATGCAGTCGGTTTATTAGCTGGAGGAAGAGGTTCAGTTGATT
TTATTCGTAAAGGTGCCAAAAAAGCTGTTTTACAGGGAATGTTTAGCATGGATAAAAATCCGGATACTTTAGCTTTGTTA
AACCAGTATGGAATTGATCACTCAGATCCAACTTTGATTTTACAAAGAGAAATTCAAATGAGTGGTCGAAATGTTTGTCG
AATTAATGGTTCACTTGTGAATACCACCATTTTAAAACAAATTGGTGAAACATTGATTGACATTCATGGACAAAACGAAC
ATCAAGAATTGATGCAACCAGATAAGCATTTGGGAATGTTGGACGAATTTGCGCGTAATGAAGTTAAACCACTTTTAAAA
CAATATCAAGAAGAATACGAACGTTACCAAGCATTAAAGAAGAAATTTGATCGAAAAAAAGCAAATGAAAAAGAATGGGC
ACAAAGAGTTGATATGCTGCGTTTCCAAGCTAAGGAAATTGAAGACGCAAATCTTCAAGTAGGTGAAGAGGAACAACTTA
ATTCACAAAAAGAGTTACTTGAAAATTTTCAAAAAATTAGTACTGCTCTACAAACTGCTCAGTTGGCTTTAGAAAATGAA
GAATCTGCCGGGGCCATTGACACGACTGGGGAAGCCATGAATGCTTTAAGAGATATTGAGGATATTGATGATAAGTACAA
GAATATCTCGAATATTGTTTCTTCAGCCTATTATCAATTACAGGATGCTACGAATGATATTAGTGGTGAACTTGATAATA
TGGAGTGGGATGAAGGCAAGTTAGACCAGGTAGAGAAACGGTTAGAAGACATCTATCAATTAAAAAAGAAATATGGTGAC
AATATTAAACAGATTCTTGCATATGATCAAAAAGTTTCTGATGAGCTTCATAGTATGATTGATTCAGAGTCTGATGAGGG
TCAAATGGAAGAAAAACTTGAAAAATTACAAGAATCACTCAAAAAAACTGCAATAACGTTATCACAAACACGAAAAAAAG
CAGCCAAACATCTGAAAATTGCCGTTCATGAGCAATTACAACAACTCTATATGGATAAGGCAGAATTCGAAGTGCATTTT
TCTCAGACAGATGACTTAAAATTTAAGCCAACCGGAATAGATAATGTAGAGTTTTATTTACGGACGAATACTGGTGAAGC
AATGGGACCTTTATCCAGAATTGCTTCTGGTGGAGAACTTTCGCGAATTATGCTGGCGTTAAAAACTATTTTTGCTAAGT
CACAAGGAGTAACGAGTATCATTTTTGATGAGGTTGATACAGGGGTTAGTGGACGTGTTGCACAAGCAATTGCAGAAAAA
ATTAAACTAATTGCAGGTTATTCACAAGTGCTTTGTATTACACATCTACCTCAAGTTGCCGCAGAAGCCGATCATCAATT
ATTTGTTTCGAAGGTTATTAAGGATGGAAGAACTGAAACGAAATTAAACGATTTAGATACAGATGGACGTGTACAAGAAT
TGGCACGAATGTTAGCTGGAAGTACCGTCACAAAGTTAAGTATTCAACATGCAAAAGAGCTTCTTAAGATGGCCCACACG
ACCTCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.811

100

0.486

Multiple sequence alignment