Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB3219_RS03190 Genome accession   NZ_OZ061250
Coordinates   635337..635882 (-) Length   181 a.a.
NCBI ID   WP_057805190.1    Uniprot ID   A0A0R2KA83
Organism   Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 630337..640882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3219_RS03165 - 631518..632147 (+) 630 WP_253953626.1 MFS transporter -
  AB3219_RS03170 - 632169..632705 (+) 537 WP_260365881.1 MFS transporter -
  AB3219_RS03175 - 632766..634114 (-) 1349 Protein_628 FAD-dependent oxidoreductase -
  AB3219_RS03180 - 634140..634820 (-) 681 WP_216754368.1 EAL domain-containing protein -
  AB3219_RS03185 rpsR 635076..635315 (-) 240 WP_057784110.1 30S ribosomal protein S18 -
  AB3219_RS03190 ssb 635337..635882 (-) 546 WP_057805190.1 single-stranded DNA-binding protein Machinery gene
  AB3219_RS03195 rpsF 635924..636214 (-) 291 WP_057805189.1 30S ribosomal protein S6 -
  AB3219_RS03200 gyrA 636406..638946 (-) 2541 WP_260365878.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19760.13 Da        Isoelectric Point: 4.4851

>NTDB_id=1165612 AB3219_RS03190 WP_057805190.1 635337..635882(-) (ssb) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNSQGEREADFINCVIWRKAAENFANFTHKGSLVGVDGRIQTR
SYENQQGQRVYVTEVVVENFSLLESRAQSEQRQQQSGNTGFQSNAPQSSGNTNPFDAGQGNNNSNSQSNSNGNASSASSN
PNDPFADNGEQIDISDDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=1165612 AB3219_RS03190 WP_057805190.1 635337..635882(-) (ssb) [Pediococcus ethanolidurans isolate Pediococcus ethanolidurans CIRM-BIA2669]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGATCCTGATTTACGATACACCAACAGCGGTGCTGCAGTTGC
TACTTTCACAGTAGCAGTTAATCGACAATTTACGAACTCTCAAGGAGAACGTGAAGCTGATTTTATTAACTGTGTGATTT
GGCGAAAGGCAGCTGAGAACTTTGCTAACTTTACCCATAAAGGTTCATTGGTGGGTGTGGATGGACGGATTCAAACGCGT
TCATACGAAAACCAACAGGGTCAACGGGTATATGTAACAGAAGTAGTTGTTGAAAACTTTTCATTGTTGGAATCTCGAGC
TCAGTCCGAGCAACGTCAGCAACAGAGCGGCAACACGGGATTTCAGAGCAATGCTCCTCAATCATCCGGCAATACCAATC
CATTTGATGCTGGGCAAGGAAACAACAATAGTAACAGCCAAAGCAACAGCAATGGCAATGCTTCTAGTGCAAGTTCTAAC
CCGAATGATCCATTTGCAGATAATGGCGAACAAATTGATATTTCCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R2KA83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.935

100

0.691
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.923

100

0.586

Multiple sequence alignment