Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACE4RH_RS11275 Genome accession   NZ_OZ059824
Coordinates   2213160..2213555 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E3_22S00626-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2208160..2218555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RH_RS11250 thiE 2208759..2209400 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACE4RH_RS11255 thiM 2209402..2210193 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACE4RH_RS11260 thiD 2210177..2211007 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACE4RH_RS11265 tenA 2211000..2211689 (-) 690 WP_000396068.1 thiaminase II -
  ACE4RH_RS11270 sceD 2212076..2212771 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACE4RH_RS11275 ssb 2213160..2213555 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACE4RH_RS11280 - 2213749..2214189 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACE4RH_RS11285 fabZ 2214248..2214688 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACE4RH_RS11290 murA 2214722..2215987 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACE4RH_RS11295 - 2216098..2216331 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACE4RH_RS11300 - 2216463..2216555 (-) 93 WP_374731616.1 hypothetical protein -
  ACE4RH_RS11305 - 2216985..2217389 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1165400 ACE4RH_RS11275 WP_000932694.1 2213160..2213555(-) (ssb) [Staphylococcus aureus isolate E3_22S00626-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1165400 ACE4RH_RS11275 WP_000932694.1 2213160..2213555(-) (ssb) [Staphylococcus aureus isolate E3_22S00626-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment