Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACE4RD_RS09700 Genome accession   NZ_OZ059823
Coordinates   1943734..1944420 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E2_22S00623-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1938734..1949420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RD_RS09665 yqeH 1939261..1940361 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACE4RD_RS09670 aroE 1940375..1941181 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACE4RD_RS09675 yhbY 1941185..1941475 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACE4RD_RS09680 nadD 1941478..1942047 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACE4RD_RS09685 yqeK 1942037..1942621 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACE4RD_RS09690 rsfS 1942622..1942975 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACE4RD_RS09695 - 1942978..1943694 (+) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  ACE4RD_RS09700 comEA 1943734..1944420 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACE4RD_RS09705 - 1944512..1944973 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACE4RD_RS09710 comEC 1944978..1947179 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACE4RD_RS09715 holA 1947236..1948210 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACE4RD_RS09720 rpsT 1948255..1948506 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1165348 ACE4RD_RS09700 WP_001825349.1 1943734..1944420(+) (comEA) [Staphylococcus aureus isolate E2_22S00623-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1165348 ACE4RD_RS09700 WP_001825349.1 1943734..1944420(+) (comEA) [Staphylococcus aureus isolate E2_22S00623-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment