Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACE4RD_RS06660 Genome accession   NZ_OZ059823
Coordinates   1342548..1343117 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E2_22S00623-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337548..1348117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RD_RS06635 cysE 1338761..1339408 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACE4RD_RS06640 cysS 1339392..1340792 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACE4RD_RS06645 - 1340785..1341189 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACE4RD_RS06650 rlmB 1341197..1341943 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACE4RD_RS06655 - 1341943..1342467 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACE4RD_RS06660 sigH 1342548..1343117 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACE4RD_RS06665 rpmG 1343232..1343375 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACE4RD_RS06670 secE 1343431..1343613 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACE4RD_RS06675 nusG 1343626..1344174 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACE4RD_RS06680 rplK 1344355..1344777 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACE4RD_RS06685 rplA 1344985..1345677 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACE4RD_RS06690 rplJ 1345949..1346449 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACE4RD_RS06695 rplL 1346492..1346860 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACE4RD_RS06700 - 1347035..1347643 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1165338 ACE4RD_RS06660 WP_000872866.1 1342548..1343117(+) (sigH) [Staphylococcus aureus isolate E2_22S00623-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165338 ACE4RD_RS06660 WP_000872866.1 1342548..1343117(+) (sigH) [Staphylococcus aureus isolate E2_22S00623-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment