Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACE4RD_RS00410 Genome accession   NZ_OZ059823
Coordinates   85061..85456 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E2_22S00623-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 80061..90456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RD_RS00385 thiE 80660..81301 (-) 642 WP_000483161.1 thiamine phosphate synthase -
  ACE4RD_RS00390 thiM 81303..82094 (-) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACE4RD_RS00395 thiD 82078..82908 (-) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACE4RD_RS00400 tenA 82901..83590 (-) 690 WP_000396068.1 thiaminase II -
  ACE4RD_RS00405 sceD 83977..84672 (-) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACE4RD_RS00410 ssb 85061..85456 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACE4RD_RS00415 - 85650..86090 (+) 441 WP_000846746.1 YwpF-like family protein -
  ACE4RD_RS00420 fabZ 86149..86589 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACE4RD_RS00425 murA 86623..87888 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACE4RD_RS00430 - 87999..88232 (-) 234 WP_000384523.1 DUF1146 family protein -
  ACE4RD_RS00435 - 88364..88456 (-) 93 WP_374731616.1 hypothetical protein -
  ACE4RD_RS00440 - 88886..89290 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1165326 ACE4RD_RS00410 WP_000932694.1 85061..85456(-) (ssb) [Staphylococcus aureus isolate E2_22S00623-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1165326 ACE4RD_RS00410 WP_000932694.1 85061..85456(-) (ssb) [Staphylococcus aureus isolate E2_22S00623-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment