Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACE4RE_RS00720 Genome accession   NZ_OZ059822
Coordinates   150049..150618 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E9_23S01315-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 145049..155618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RE_RS00680 - 145523..146131 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACE4RE_RS00685 rplL 146306..146674 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACE4RE_RS00690 rplJ 146717..147217 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACE4RE_RS00695 rplA 147489..148181 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACE4RE_RS00700 rplK 148389..148811 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACE4RE_RS00705 nusG 148992..149540 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACE4RE_RS00710 secE 149553..149735 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACE4RE_RS00715 rpmG 149791..149934 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACE4RE_RS00720 sigH 150049..150618 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACE4RE_RS00725 - 150699..151223 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACE4RE_RS00730 rlmB 151223..151969 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACE4RE_RS00735 - 151977..152381 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACE4RE_RS00740 cysS 152374..153774 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACE4RE_RS00745 cysE 153758..154405 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1165281 ACE4RE_RS00720 WP_000872866.1 150049..150618(-) (sigH) [Staphylococcus aureus isolate E9_23S01315-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165281 ACE4RE_RS00720 WP_000872866.1 150049..150618(-) (sigH) [Staphylococcus aureus isolate E9_23S01315-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment