Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACE4RG_RS13840 Genome accession   NZ_OZ059819
Coordinates   2789177..2789746 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate H2_22S00635-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2784177..2794746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RG_RS13800 - 2784651..2785259 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACE4RG_RS13805 rplL 2785434..2785802 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACE4RG_RS13810 rplJ 2785845..2786345 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACE4RG_RS13815 rplA 2786617..2787309 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACE4RG_RS13820 rplK 2787517..2787939 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACE4RG_RS13825 nusG 2788120..2788668 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACE4RG_RS13830 secE 2788681..2788863 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACE4RG_RS13835 rpmG 2788919..2789062 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACE4RG_RS13840 sigH 2789177..2789746 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACE4RG_RS13845 - 2789827..2790351 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACE4RG_RS13850 rlmB 2790351..2791097 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACE4RG_RS13855 - 2791105..2791509 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACE4RG_RS13860 cysS 2791502..2792902 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACE4RG_RS13865 cysE 2792886..2793533 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1165189 ACE4RG_RS13840 WP_000872866.1 2789177..2789746(-) (sigH) [Staphylococcus aureus isolate H2_22S00635-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165189 ACE4RG_RS13840 WP_000872866.1 2789177..2789746(-) (sigH) [Staphylococcus aureus isolate H2_22S00635-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment