Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACE4RG_RS05870 Genome accession   NZ_OZ059819
Coordinates   1198205..1198600 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate H2_22S00635-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1193205..1203600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RG_RS05840 - 1194371..1194775 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACE4RG_RS05845 - 1195205..1195297 (+) 93 WP_374731616.1 hypothetical protein -
  ACE4RG_RS05850 - 1195429..1195662 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACE4RG_RS05855 murA 1195773..1197038 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACE4RG_RS05860 fabZ 1197072..1197512 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACE4RG_RS05865 - 1197571..1198011 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACE4RG_RS05870 ssb 1198205..1198600 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACE4RG_RS05875 sceD 1198989..1199684 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACE4RG_RS05880 tenA 1200071..1200760 (+) 690 WP_000396068.1 thiaminase II -
  ACE4RG_RS05885 thiD 1200753..1201583 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACE4RG_RS05890 thiM 1201567..1202358 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACE4RG_RS05895 thiE 1202360..1203001 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1165155 ACE4RG_RS05870 WP_000932694.1 1198205..1198600(+) (ssb) [Staphylococcus aureus isolate H2_22S00635-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1165155 ACE4RG_RS05870 WP_000932694.1 1198205..1198600(+) (ssb) [Staphylococcus aureus isolate H2_22S00635-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment