Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACE4RB_RS13000 Genome accession   NZ_OZ059818
Coordinates   2561188..2561874 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E4_22S00627-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2556188..2566874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RB_RS12965 yqeH 2556715..2557815 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACE4RB_RS12970 aroE 2557829..2558635 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACE4RB_RS12975 yhbY 2558639..2558929 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACE4RB_RS12980 nadD 2558932..2559501 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACE4RB_RS12985 yqeK 2559491..2560075 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACE4RB_RS12990 rsfS 2560076..2560429 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACE4RB_RS12995 - 2560432..2561148 (+) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  ACE4RB_RS13000 comEA 2561188..2561874 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACE4RB_RS13005 - 2561966..2562427 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACE4RB_RS13010 comEC 2562432..2564633 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACE4RB_RS13015 holA 2564690..2565664 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACE4RB_RS13020 rpsT 2565709..2565960 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1165139 ACE4RB_RS13000 WP_001825349.1 2561188..2561874(+) (comEA) [Staphylococcus aureus isolate E4_22S00627-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1165139 ACE4RB_RS13000 WP_001825349.1 2561188..2561874(+) (comEA) [Staphylococcus aureus isolate E4_22S00627-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment