Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACE4RB_RS09960 Genome accession   NZ_OZ059818
Coordinates   1960003..1960572 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E4_22S00627-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1955003..1965572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RB_RS09935 cysE 1956216..1956863 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACE4RB_RS09940 cysS 1956847..1958247 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACE4RB_RS09945 - 1958240..1958644 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACE4RB_RS09950 rlmB 1958652..1959398 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACE4RB_RS09955 - 1959398..1959922 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACE4RB_RS09960 sigH 1960003..1960572 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACE4RB_RS09965 rpmG 1960687..1960830 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACE4RB_RS09970 secE 1960886..1961068 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACE4RB_RS09975 nusG 1961081..1961629 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACE4RB_RS09980 rplK 1961810..1962232 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACE4RB_RS09985 rplA 1962440..1963132 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACE4RB_RS09990 rplJ 1963404..1963904 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACE4RB_RS09995 rplL 1963947..1964315 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACE4RB_RS10000 - 1964490..1965098 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1165129 ACE4RB_RS09960 WP_000872866.1 1960003..1960572(+) (sigH) [Staphylococcus aureus isolate E4_22S00627-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165129 ACE4RB_RS09960 WP_000872866.1 1960003..1960572(+) (sigH) [Staphylococcus aureus isolate E4_22S00627-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment