Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACE4RF_RS09475 Genome accession   NZ_OZ059817
Coordinates   1872853..1873422 (-) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E6_22S00629-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1867853..1878422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RF_RS09435 - 1868327..1868935 (-) 609 WP_000020293.1 class I SAM-dependent methyltransferase -
  ACE4RF_RS09440 rplL 1869110..1869478 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACE4RF_RS09445 rplJ 1869521..1870021 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACE4RF_RS09450 rplA 1870293..1870985 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACE4RF_RS09455 rplK 1871193..1871615 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACE4RF_RS09460 nusG 1871796..1872344 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACE4RF_RS09465 secE 1872357..1872539 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACE4RF_RS09470 rpmG 1872595..1872738 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACE4RF_RS09475 sigH 1872853..1873422 (-) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACE4RF_RS09480 - 1873503..1874027 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACE4RF_RS09485 rlmB 1874027..1874773 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACE4RF_RS09490 - 1874781..1875185 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACE4RF_RS09495 cysS 1875178..1876578 (-) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACE4RF_RS09500 cysE 1876562..1877209 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1165094 ACE4RF_RS09475 WP_000872866.1 1872853..1873422(-) (sigH) [Staphylococcus aureus isolate E6_22S00629-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165094 ACE4RF_RS09475 WP_000872866.1 1872853..1873422(-) (sigH) [Staphylococcus aureus isolate E6_22S00629-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment