Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACE4RF_RS04010 Genome accession   NZ_OZ059817
Coordinates   761768..762454 (+) Length   228 a.a.
NCBI ID   WP_001825349.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E6_22S00629-1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 756768..767454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RF_RS03975 yqeH 757295..758395 (+) 1101 WP_001280151.1 ribosome biogenesis GTPase YqeH -
  ACE4RF_RS03980 aroE 758409..759215 (+) 807 WP_000666746.1 shikimate dehydrogenase -
  ACE4RF_RS03985 yhbY 759219..759509 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ACE4RF_RS03990 nadD 759512..760081 (+) 570 WP_000725164.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ACE4RF_RS03995 yqeK 760071..760655 (+) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ACE4RF_RS04000 rsfS 760656..761009 (+) 354 WP_001088020.1 ribosome silencing factor -
  ACE4RF_RS04005 - 761012..761728 (+) 717 WP_000084838.1 class I SAM-dependent methyltransferase -
  ACE4RF_RS04010 comEA 761768..762454 (+) 687 WP_001825349.1 ComEA family DNA-binding protein Machinery gene
  ACE4RF_RS04015 - 762546..763007 (+) 462 WP_000439690.1 ComE operon protein 2 -
  ACE4RF_RS04020 comEC 763012..765213 (+) 2202 WP_001807826.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ACE4RF_RS04025 holA 765270..766244 (+) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ACE4RF_RS04030 rpsT 766289..766540 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25783.41 Da        Isoelectric Point: 9.3305

>NTDB_id=1165071 ACE4RF_RS04010 WP_001825349.1 761768..762454(+) (comEA) [Staphylococcus aureus isolate E6_22S00629-1]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQVKDGDDSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGANSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=1165071 ACE4RF_RS04010 WP_001825349.1 761768..762454(+) (comEA) [Staphylococcus aureus isolate E6_22S00629-1]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATGATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTAGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGCAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.476

99.561

0.961
  comEA Staphylococcus aureus N315

96.476

99.561

0.961

Multiple sequence alignment