Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACE4RF_RS01510 Genome accession   NZ_OZ059817
Coordinates   281879..282274 (+) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate E6_22S00629-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 276879..287274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RF_RS01480 - 278045..278449 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  ACE4RF_RS01485 - 278879..278971 (+) 93 WP_374731616.1 hypothetical protein -
  ACE4RF_RS01490 - 279103..279336 (+) 234 WP_000384523.1 DUF1146 family protein -
  ACE4RF_RS01495 murA 279447..280712 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACE4RF_RS01500 fabZ 280746..281186 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACE4RF_RS01505 - 281245..281685 (-) 441 WP_000846746.1 YwpF-like family protein -
  ACE4RF_RS01510 ssb 281879..282274 (+) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  ACE4RF_RS01515 sceD 282663..283358 (+) 696 WP_000751995.1 lytic transglycosylase SceD -
  ACE4RF_RS01520 tenA 283745..284434 (+) 690 WP_000396068.1 thiaminase II -
  ACE4RF_RS01525 thiD 284427..285257 (+) 831 WP_000594965.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACE4RF_RS01530 thiM 285241..286032 (+) 792 WP_001108486.1 hydroxyethylthiazole kinase -
  ACE4RF_RS01535 thiE 286034..286675 (+) 642 WP_000483161.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=1165060 ACE4RF_RS01510 WP_000932694.1 281879..282274(+) (ssb) [Staphylococcus aureus isolate E6_22S00629-1]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1165060 ACE4RF_RS01510 WP_000932694.1 281879..282274(+) (ssb) [Staphylococcus aureus isolate E6_22S00629-1]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment