Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACE4RC_RS11535 Genome accession   NZ_OZ059816
Coordinates   2280002..2280571 (+) Length   189 a.a.
NCBI ID   WP_000872866.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate H2_22S00625-1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2275002..2285571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4RC_RS11510 cysE 2276215..2276862 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACE4RC_RS11515 cysS 2276846..2278246 (+) 1401 WP_000631961.1 cysteine--tRNA ligase -
  ACE4RC_RS11520 - 2278239..2278643 (+) 405 WP_000370181.1 Mini-ribonuclease 3 -
  ACE4RC_RS11525 rlmB 2278651..2279397 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACE4RC_RS11530 - 2279397..2279921 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ACE4RC_RS11535 sigH 2280002..2280571 (+) 570 WP_000872866.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACE4RC_RS11540 rpmG 2280686..2280829 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACE4RC_RS11545 secE 2280885..2281067 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACE4RC_RS11550 nusG 2281080..2281628 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACE4RC_RS11555 rplK 2281809..2282231 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACE4RC_RS11560 rplA 2282439..2283131 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACE4RC_RS11565 rplJ 2283403..2283903 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACE4RC_RS11570 rplL 2283946..2284314 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACE4RC_RS11575 - 2284489..2285097 (+) 609 WP_000020293.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23043.97 Da        Isoelectric Point: 9.6030

>NTDB_id=1165043 ACE4RC_RS11535 WP_000872866.1 2280002..2280571(+) (sigH) [Staphylococcus aureus isolate H2_22S00625-1]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRCIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGKQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1165043 ACE4RC_RS11535 WP_000872866.1 2280002..2280571(+) (sigH) [Staphylococcus aureus isolate H2_22S00625-1]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGATGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAAAGCAGCCTTTCACAAATTATGTTCAGTGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.413

100

0.984
  sigH Staphylococcus aureus N315

97.354

100

0.974

Multiple sequence alignment