Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HSW_RS21535 Genome accession   NZ_CP007145
Coordinates   4728707..4730095 (+) Length   462 a.a.
NCBI ID   WP_044003820.1    Uniprot ID   W8F2Y1
Organism   Hymenobacter swuensis DY53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4723707..4735095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HSW_RS25020 (Hsw_4162) - 4724470..4725861 (-) 1392 WP_044003819.1 sensor histidine kinase -
  HSW_RS23250 (Hsw_4163) - 4726005..4728161 (-) 2157 WP_081768553.1 T9SS type A sorting domain-containing protein -
  HSW_RS21535 (Hsw_4164) radA 4728707..4730095 (+) 1389 WP_044003820.1 DNA repair protein RadA Machinery gene
  HSW_RS21540 (Hsw_4165) - 4730385..4731839 (+) 1455 WP_044003821.1 redoxin family protein -
  HSW_RS24470 (Hsw_4166) - 4732116..4732661 (+) 546 WP_155833099.1 hypothetical protein -
  HSW_RS21545 (Hsw_4167) - 4732890..4733297 (+) 408 WP_044003822.1 T9SS type A sorting domain-containing protein -
  HSW_RS21550 (Hsw_4168) - 4733412..4734434 (+) 1023 WP_044003823.1 SPASM domain-containing protein -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50065.35 Da        Isoelectric Point: 6.3163

>NTDB_id=116493 HSW_RS21535 WP_044003820.1 4728707..4730095(+) (radA) [Hymenobacter swuensis DY53]
MAKVKTLYFCQNCGAQSAKWIGRCPSCGEWNTYVEEVVEKTDTATAANAWKASSSVGTTSKAAKPKPLGDILYEEESRLN
THDDELNRVLGGGLVPGSLVLIGGEPGIGKSTLMLQIAMQLNGLRILYVSGEESEQQIKMRAERLGRQHPGLYILTETNT
QNIFRQIDQLQPNVVVVDSIQTLHSTLVESGAGSVSQVRECTTELLKYAKDTGVPVLLIGHITKDGSIAGPKILEHMVDT
VLQFEGDRHLTYRILRTIKNRFGSTSELGIYEMQGAGLRQVSNPSEILLSQRTEVLSGLAIGATLEGNRPLLVEVQALVT
PATYGTPQRSSTGFDGKRLQMLLAVLEKRSGLRLGQHDVFLNIAGGLRLEDPALDLAVCAAVVSSLNDVPIRGEICLAAE
VGLSGEIRAVSRLDQRLSEAEKLGFAEMYISQFNAKGLDLARYGIRVHPAGRLDEVLTGLFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=116493 HSW_RS21535 WP_044003820.1 4728707..4730095(+) (radA) [Hymenobacter swuensis DY53]
ATGGCGAAAGTCAAAACCCTTTATTTCTGCCAGAACTGCGGCGCCCAATCCGCAAAATGGATTGGACGCTGCCCCAGCTG
CGGCGAGTGGAACACTTACGTGGAGGAAGTGGTGGAGAAAACCGACACTGCTACGGCCGCCAACGCCTGGAAGGCCTCTT
CCTCAGTGGGTACCACCTCCAAAGCCGCCAAACCCAAGCCGCTGGGCGACATTCTGTACGAGGAGGAGTCGCGCCTGAAT
ACCCACGACGACGAGCTGAACCGGGTGCTGGGTGGTGGCCTCGTGCCCGGCTCCCTGGTGCTTATTGGGGGCGAGCCAGG
CATCGGCAAAAGCACCCTCATGCTTCAGATTGCCATGCAGCTCAACGGGTTGCGTATTCTGTACGTGAGCGGGGAGGAAA
GCGAGCAGCAGATTAAGATGCGGGCCGAGCGCCTGGGCCGCCAGCACCCGGGTCTCTACATCCTTACTGAAACCAACACC
CAGAATATCTTCCGTCAGATCGACCAGCTCCAACCCAACGTGGTGGTGGTCGATTCCATCCAGACCCTGCACAGCACCTT
GGTAGAAAGCGGGGCCGGCTCTGTGAGCCAGGTGCGCGAGTGCACCACCGAGCTACTCAAATACGCCAAGGATACCGGCG
TGCCCGTGCTGCTCATCGGCCACATCACCAAGGATGGCTCCATTGCCGGCCCTAAGATTCTGGAGCACATGGTGGATACC
GTGCTGCAGTTTGAGGGCGACCGGCACCTGACCTACCGCATCCTGCGCACCATCAAAAACCGCTTCGGTTCCACCTCTGA
GCTAGGCATTTACGAGATGCAAGGCGCAGGCCTGCGGCAGGTGAGTAACCCGTCAGAAATCCTGCTTAGTCAGCGCACCG
AGGTGCTTAGCGGTTTGGCCATCGGGGCCACGCTGGAGGGCAACCGGCCGCTGCTGGTGGAAGTGCAGGCCCTCGTGACG
CCCGCCACCTACGGCACCCCTCAGCGCAGCTCCACCGGCTTTGATGGTAAGCGTCTGCAGATGCTGCTGGCGGTGCTGGA
GAAACGCAGCGGCCTGCGCCTGGGTCAGCACGACGTATTTCTGAACATTGCCGGTGGCCTGCGCCTCGAAGACCCGGCCC
TGGATTTGGCCGTGTGTGCCGCCGTGGTCAGCTCCCTCAACGATGTGCCTATCCGGGGCGAAATCTGTCTGGCGGCGGAA
GTGGGCCTGAGCGGCGAAATCAGGGCCGTGAGCCGGCTGGATCAGCGTCTGAGCGAGGCGGAAAAGCTGGGTTTTGCGGA
AATGTACATTTCGCAGTTCAACGCCAAGGGCCTCGACCTAGCGCGCTACGGTATCCGGGTACACCCGGCGGGCCGCCTGG
ATGAGGTTCTGACGGGCTTGTTTGGGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-226)

Subunit ChlI of Mg-chelatase (ChlI)

(348-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8F2Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.94

100

0.522
  radA Streptococcus pneumoniae Rx1

48.164

100

0.483
  radA Streptococcus pneumoniae D39

48.164

100

0.483
  radA Streptococcus pneumoniae R6

48.164

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.164

100

0.483
  radA Streptococcus mitis NCTC 12261

47.948

100

0.481
  radA Streptococcus mitis SK321

47.948

100

0.481

Multiple sequence alignment